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Clc04G01624 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01624
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Genome locationClcChr04:5009786..5010290
RNA-Seq ExpressionClc04G01624
SyntenyClc04G01624
Gene Ontology termsGO:0044419 - interspecies interaction between organisms (biological process)
InterPro domainsIPR010851 - Defensin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07492.1 hypothetical protein Prudu_019451 [Prunus dulcis]1.6e-1262.07Show/hide
Query:  VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC
        VPQ A A ++C + LY +GCTL DCGKKCWEKHH   ++CI  N+AQT YACYC F+C
Subjt:  VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC

CAB4286917.1 unnamed protein product [Prunus armeniaca]1.6e-1251.32Show/hide
Query:  VLIFAGFPSFALIL----VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC
        ++ F  F  FA+ L    VPQ A A ++C++ LY++GCTL DCGKKCW+KHH   H C+  N+AQ  YACYC F+C
Subjt:  VLIFAGFPSFALIL----VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC

KAA0042348.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa]8.7e-2263.22Show/hide
Query:  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCGK
        M KL  SS I+ I L  A     A+ILVPQGA A ++CQD LY+ GCTL DCG+KCWEKHH  SHQCIPT+  QTIYACYCF++CG+
Subjt:  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCGK

KAE8649772.1 hypothetical protein Csa_012405, partial [Cucumis sativus]8.4e-2579.37Show/hide
Query:  ALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCG
        AL+L  Q  SAAQ+CQD+LYN GC L+DCGKKCWEKHH+ISHQCIPTN +QTIYACYCFFDCG
Subjt:  ALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCG

KGN64987.1 hypothetical protein Csa_022748 [Cucumis sativus]7.3e-2166.28Show/hide
Query:  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCG
        M KL  SS I+ IVLI A     A+I +PQGA AA +CQDILYN+GCTL DCG+KCWEKHH  S QCIPT+  QTIYACYCF+ CG
Subjt:  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCG

TrEMBL top hitse value%identityAlignment
A0A0A0L2R3 Uncharacterized protein6.3e-2669.51Show/hide
Query:  VSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCG
        + SS II   LIFA     AL+L  Q  SAAQ+CQD+LYN GC L+DCGKKCWEKHH++SHQCIPTN +QTIYACYCFFDCG
Subjt:  VSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCG

A0A0A0LVZ5 Uncharacterized protein3.6e-2166.28Show/hide
Query:  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCG
        M KL  SS I+ IVLI A     A+I +PQGA AA +CQDILYN+GCTL DCG+KCWEKHH  S QCIPT+  QTIYACYCF+ CG
Subjt:  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCG

A0A4Y1RT05 Uncharacterized protein7.9e-1362.07Show/hide
Query:  VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC
        VPQ A A ++C + LY +GCTL DCGKKCWEKHH   ++CI  N+AQT YACYC F+C
Subjt:  VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC

A0A5A7THQ7 S locus-related glycoprotein 1 binding pollen coat4.2e-2263.22Show/hide
Query:  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCGK
        M KL  SS I+ I L  A     A+ILVPQGA A ++CQD LY+ GCTL DCG+KCWEKHH  SHQCIPT+  QTIYACYCF++CG+
Subjt:  MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCGK

A0A6J5VH03 Uncharacterized protein7.9e-1351.32Show/hide
Query:  VLIFAGFPSFALIL----VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC
        ++ F  F  FA+ L    VPQ A A ++C++ LY++GCTL DCGKKCW+KHH   H C+  N+AQ  YACYC F+C
Subjt:  VLIFAGFPSFALIL----VPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGCTAGTTTCTTCTTCTAGTATTATTTTCATTGTTCTTATTTTTGCAGGTTTTCCTTCTTTTGCACTAATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAA
ATGTCAAGACATATTGTATAACAATGGGTGCACTCTTGATGACTGTGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCATTCCAACTAATCTTGCGC
AAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTAAAAAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGCTAGTTTCTTCTTCTAGTATTATTTTCATTGTTCTTATTTTTGCAGGTTTTCCTTCTTTTGCACTAATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAA
ATGTCAAGACATATTGTATAACAATGGGTGCACTCTTGATGACTGTGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCATTCCAACTAATCTTGCGC
AAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTAAAAAAAATTGA
Protein sequenceShow/hide protein sequence
MAKLVSSSSIIFIVLIFAGFPSFALILVPQGASAAQKCQDILYNNGCTLDDCGKKCWEKHHSISHQCIPTNLAQTIYACYCFFDCGKKN