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Clc04G01700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC105165031
Genome locationClcChr04:5666282..5667800
RNA-Seq ExpressionClc04G01700
SyntenyClc04G01700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019150696.1 PREDICTED: uncharacterized protein LOC109147552 [Ipomoea nil]9.9e-1843.28Show/hide
Query:  ILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKHLK
        I +I++  R+ R+E +++ +S     V  T + + EE  + MA+    TL +L+APN+  QPLCIT P                       GEDPHKHLK
Subjt:  ILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKHLK

Query:  EFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        EF +VC GM+P GVT+E I+LRAFPF LKD AKD
Subjt:  EFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

XP_019180076.1 PREDICTED: uncharacterized protein LOC109175288 [Ipomoea nil]4.4e-1843.28Show/hide
Query:  ILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKHLK
        I +I++  R+ R+E +++ +S     V  T + + EE  + MA+    TL +L+AP++ QQPLCIT P                       GEDPHKHLK
Subjt:  ILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKHLK

Query:  EFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        EF +VC GM+P GVT+E I+LRAFPF LKD AKD
Subjt:  EFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

XP_019198426.1 PREDICTED: uncharacterized protein LOC109192308 [Ipomoea nil]1.5e-1844.03Show/hide
Query:  ILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKHLK
        I +I++  R+ R+E +++ +S     V  T + + EE  + MA+    TL +L+APN+ QQPLCIT P                       GEDPHKHLK
Subjt:  ILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKHLK

Query:  EFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        EF +VC GM+P GVT+E I+LRAFPF LKD AKD
Subjt:  EFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

XP_031099689.1 uncharacterized protein LOC116003888 [Ipomoea triloba]9.9e-1855.56Show/hide
Query:  EETPMAQLVECTLWDLSAPNVVQQPLCITYPA----------------------TTGEDPHKHLKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        EE PMAQ    TL +L APN+ QQPLCIT+PA                        GEDPHKHLKEF +VC  M+P GVTEEQI LRAFPF LKD AKD
Subjt:  EETPMAQLVECTLWDLSAPNVVQQPLCITYPA----------------------TTGEDPHKHLKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

XP_031131881.1 uncharacterized protein LOC116033267 [Ipomoea triloba]1.3e-1742.54Show/hide
Query:  ILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKHLK
        I +I++  R+ R+E +++ +S     V  T + + EE  + MA+    TL +L+ P++ QQPLCIT P                       GEDPHKHLK
Subjt:  ILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKHLK

Query:  EFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        EF +VC GM+P GVT+E I LRAFPF LKD AKD
Subjt:  EFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

TrEMBL top hitse value%identityAlignment
A0A6P6SET8 uncharacterized protein LOC1136905527.6e-1643.38Show/hide
Query:  DIDREERRQRREAREQ----RASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKH
        +I++  R  R+  RE+     +S  H  V    +   E EE       E TL +L+AP++ QQPLCITYP                       GEDPHKH
Subjt:  DIDREERRQRREAREQ----RASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKH

Query:  LKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        LKEF +VC  M+P GVTEEQI LRAFPF L D AKD
Subjt:  LKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

A0A6P6V861 uncharacterized protein LOC1137183731.5e-1665.15Show/hide
Query:  TLWDLSAPNVVQQPLCITYPATTGEDPHKHLKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        TL +L+AP++ QQPLCIT+P+   E PHKHL+EF +VC  M+P G+TEEQI +RAFPFFLKD AKD
Subjt:  TLWDLSAPNVVQQPLCITYPATTGEDPHKHLKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

A0A6P6W3G9 uncharacterized protein LOC1137293642.6e-1648.25Show/hide
Query:  RRQRREAREQRASEEHTRVRGTFEELLEEEETP-MAQLVECTLWDLSAPNVVQQPLCITYPAT-------TGEDPHKHLKEFIIVCEGMRPHGVTEEQIN
        RRQ+       + +E      + E   EE   P +A     TL +L+ PNV QQPLCIT+P T       +GEDPHKHLKEF +VC  M+P GVTE+ I 
Subjt:  RRQRREAREQRASEEHTRVRGTFEELLEEEETP-MAQLVECTLWDLSAPNVVQQPLCITYPAT-------TGEDPHKHLKEFIIVCEGMRPHGVTEEQIN

Query:  LRAFPFFLKDDAKD
        LRAFPF L D AKD
Subjt:  LRAFPFFLKDDAKD

A0A6P6WXZ3 uncharacterized protein LOC1137355117.6e-1643.38Show/hide
Query:  DIDREERRQRREAREQ----RASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKH
        +I++  R  R+  RE+     +S  H  V    +   E EE       E TL +L+AP++ QQPLCITYP                       GEDPHKH
Subjt:  DIDREERRQRREAREQ----RASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKH

Query:  LKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        LKEF +VC  M+P GVTEEQI LRAFPF L D AKD
Subjt:  LKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

A0A6P6X8T1 Reverse transcriptase9.0e-1743.38Show/hide
Query:  DIDREERRQRREAREQ----RASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKH
        +I++  R  R+  RE+     +S  H  V    +   E EE       E TL +L+AP++ QQPLCITYP                       GEDPHKH
Subjt:  DIDREERRQRREAREQ----RASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYP--------------------ATTGEDPHKH

Query:  LKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD
        LKEF ++C  M+P GVTEEQI LRAFPFFL D AKD
Subjt:  LKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTATTGGCGAAGTGCAGCAGGCACCGCGGCGCTCCAAATATTTCACGCAGACAATTTAGCATTAGCGCCGCAATGCTACGACAATTTTTATAAAATAAAACTTTC
GATTCTAGACATCGATAGAGAGGAGAGACGACAGAGGAGGGAAGCTAGAGAACAAAGAGCTTCAGAGGAACATACTCGTGTAAGAGGCACATTCGAAGAGCTTTTAGAAG
AAGAAGAAACACCGATGGCGCAACTTGTAGAGTGCACATTGTGGGACCTCTCGGCCCCAAATGTTGTTCAACAGCCTCTTTGCATTACCTATCCGGCCACGACAGGTGAG
GACCCCCACAAGCATCTTAAGGAGTTCATCATCGTGTGCGAGGGGATGAGGCCCCATGGTGTGACTGAGGAGCAAATCAACCTCAGAGCCTTCCCCTTCTTCTTGAAGGA
CGACGCCAAGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCTATTGGCGAAGTGCAGCAGGCACCGCGGCGCTCCAAATATTTCACGCAGACAATTTAGCATTAGCGCCGCAATGCTACGACAATTTTTATAAAATAAAACTTTC
GATTCTAGACATCGATAGAGAGGAGAGACGACAGAGGAGGGAAGCTAGAGAACAAAGAGCTTCAGAGGAACATACTCGTGTAAGAGGCACATTCGAAGAGCTTTTAGAAG
AAGAAGAAACACCGATGGCGCAACTTGTAGAGTGCACATTGTGGGACCTCTCGGCCCCAAATGTTGTTCAACAGCCTCTTTGCATTACCTATCCGGCCACGACAGGTGAG
GACCCCCACAAGCATCTTAAGGAGTTCATCATCGTGTGCGAGGGGATGAGGCCCCATGGTGTGACTGAGGAGCAAATCAACCTCAGAGCCTTCCCCTTCTTCTTGAAGGA
CGACGCCAAGGATTAG
Protein sequenceShow/hide protein sequence
MLYWRSAAGTAALQIFHADNLALAPQCYDNFYKIKLSILDIDREERRQRREAREQRASEEHTRVRGTFEELLEEEETPMAQLVECTLWDLSAPNVVQQPLCITYPATTGE
DPHKHLKEFIIVCEGMRPHGVTEEQINLRAFPFFLKDDAKD