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Clc04G01950 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01950
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPlant self-incompatibility protein S1 family
Genome locationClcChr04:6207696..6208109
RNA-Seq ExpressionClc04G01950
SyntenyClc04G01950
Gene Ontology termsNA
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABY56091.1 self-incompatibility protein 1 [Cucumis melo]9.8e-4156.93Show/hide
Query:  MNSSLALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNF
        M SSLAL F +  +L I +HA +E ISLLPETTVT +N++ GP+L +HCRSK DDLGV+++  ++SYSF+FRPNVWGTT F C F+WV+G+ H F+IY+F
Subjt:  MNSSLALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNF

Query:  HRDANRCTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
         RD   CT+C W +Y  GPCL H + + T   CFPWN
Subjt:  HRDANRCTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

ABY56092.1 self-incompatibility protein 2 [Cucumis melo]7.0e-3955.64Show/hide
Query:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDA
        +AL F +  +L I +HA +E ISLLPETTVT +N++ GP+L +HCRSK DDLGV+++  ++SYSF+FRPNVWGTT F C F+WV+G+ H F+IY+F RD 
Subjt:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDA

Query:  NRCTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
          CT+C W +Y  GPCL H + + T   CFPWN
Subjt:  NRCTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

EXB68036.1 hypothetical protein L484_009643 [Morus notabilis]4.9e-2442.75Show/hide
Query:  IFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD-ANR
        + +V  ++F+ +  +E S  LL +T V   N L    L VHC+SK+DDLG H++    SY FSFR N WGTT F CSF+W   +   F I++  +  A+ 
Subjt:  IFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD-ANR

Query:  CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
        CT+C W ++ +G C M P + G YN+CFPWN
Subjt:  CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

KAA0046095.1 self-incompatibility protein 1 [Cucumis melo var. makuwa]1.9e-3655.65Show/hide
Query:  ILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWE
        +L I + A +E ISLLPETTV  +N++ GP+L +HCRSK DDLGV+++  ++SYSF+F PN+WGTT F C F+WV+G+ H F+IY+F RD   CT+C W 
Subjt:  ILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWE

Query:  IYRDGPCLMHPKDTGTYNMCFPWN
        IY  GPCL H K + T   CFPWN
Subjt:  IYRDGPCLMHPKDTGTYNMCFPWN

KAA0046284.1 self-incompatibility protein 1 [Cucumis melo var. makuwa]4.3e-3657.89Show/hide
Query:  ESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWEIYRDGPCLMH
        E ISLLPETTVT +N++ GP+L +HCRSK DDLGV+++  ++SYSF+FRPN+WGTT F C F+WV+G+ H F+IY+F RD   CT+C W +Y  GPCL H
Subjt:  ESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWEIYRDGPCLMH

Query:  PKDTGTYNMCFPWN
         + + T   CFPWN
Subjt:  PKDTGTYNMCFPWN

TrEMBL top hitse value%identityAlignment
A0A5A7TT98 S-protein homolog2.1e-3657.89Show/hide
Query:  ESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWEIYRDGPCLMH
        E ISLLPETTVT +N++ GP+L +HCRSK DDLGV+++  ++SYSF+FRPN+WGTT F C F+WV+G+ H F+IY+F RD   CT+C W +Y  GPCL H
Subjt:  ESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWEIYRDGPCLMH

Query:  PKDTGTYNMCFPWN
         + + T   CFPWN
Subjt:  PKDTGTYNMCFPWN

A0A5A7TXE8 S-protein homolog9.3e-3755.65Show/hide
Query:  ILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWE
        +L I + A +E ISLLPETTV  +N++ GP+L +HCRSK DDLGV+++  ++SYSF+F PN+WGTT F C F+WV+G+ H F+IY+F RD   CT+C W 
Subjt:  ILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWE

Query:  IYRDGPCLMHPKDTGTYNMCFPWN
        IY  GPCL H K + T   CFPWN
Subjt:  IYRDGPCLMHPKDTGTYNMCFPWN

B0F817 S-protein homolog4.8e-4156.93Show/hide
Query:  MNSSLALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNF
        M SSLAL F +  +L I +HA +E ISLLPETTVT +N++ GP+L +HCRSK DDLGV+++  ++SYSF+FRPNVWGTT F C F+WV+G+ H F+IY+F
Subjt:  MNSSLALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNF

Query:  HRDANRCTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
         RD   CT+C W +Y  GPCL H + + T   CFPWN
Subjt:  HRDANRCTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

B0F818 S-protein homolog3.4e-3955.64Show/hide
Query:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDA
        +AL F +  +L I +HA +E ISLLPETTVT +N++ GP+L +HCRSK DDLGV+++  ++SYSF+FRPNVWGTT F C F+WV+G+ H F+IY+F RD 
Subjt:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDA

Query:  NRCTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
          CT+C W +Y  GPCL H + + T   CFPWN
Subjt:  NRCTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

W9RF60 S-protein homolog2.4e-2442.75Show/hide
Query:  IFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD-ANR
        + +V  ++F+ +  +E S  LL +T V   N L    L VHC+SK+DDLG H++    SY FSFR N WGTT F CSF+W   +   F I++  +  A+ 
Subjt:  IFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD-ANR

Query:  CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
        CT+C W ++ +G C M P + G YN+CFPWN
Subjt:  CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 21.9e-1839.02Show/hide
Query:  AAEESISLLPETTVTTINKLAGPV-LNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDA---NRCTD--CIWEI
        ++  S+    + TV   N L   + L  HC+SKDDDLG   ++   S+SFSF    +G T + CSF W   E H+F IY  HRD+   N+C    C+W+I
Subjt:  AAEESISLLPETTVTTINKLAGPV-LNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDA---NRCTD--CIWEI

Query:  YRDGPCLMHPKDTGTYNMCFPWN
         R+GPC  +  +T  +++C+PWN
Subjt:  YRDGPCLMHPKDTGTYNMCFPWN

F4JZG1 S-protein homolog 44.6e-1738.13Show/hide
Query:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLA-GPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPN-VWGTTQFSCSFQWVQGEIHNFSIYNFHR
        + +I+L++QI F  +    +      ++ VT  N+L  G  L +HC+S DDDLG+ I+    S+SF FRP+ V G T F C F W  G+   F+IY+  R
Subjt:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLA-GPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPN-VWGTTQFSCSFQWVQGEIHNFSIYNFHR

Query:  DANR----CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
        D  R    C  CIW+I + GPC     D   +N+C+ WN
Subjt:  DANR----CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

O23020 S-protein homolog 54.2e-2647.62Show/hide
Query:  TTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWEIYRDGPCLMHPKDTGTYN
        T VT  N + GP L +HC+SK DDLG+H++ F++ Y F F+PN+W +T F CSFQW   +  +F IY+  RD   C DC WEI  DGPC +     G   
Subjt:  TTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWEIYRDGPCLMHPKDTGTYN

Query:  MCFPW
         CFPW
Subjt:  MCFPW

P0DN93 S-protein homolog 298.7e-1633.33Show/hide
Query:  IFLVLQILFIGMHAAEESISLLPETTVTTINKLA-GPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANR
        IF+VL I+   + ++    +   +T VT  N ++    L + CRSKDDDLG H++   +++ + FRP+ + TT F+C F W    +  F  Y   RD   
Subjt:  IFLVLQILFIGMHAAEESISLLPETTVTTINKLA-GPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANR

Query:  CTDCIWEIYRDGPCLMHPKDTGTYN----MCFPWN
        C  C W I  D  C+     +G +N     C+PWN
Subjt:  CTDCIWEIYRDGPCLMHPKDTGTYN----MCFPWN

Q9FMQ4 S-protein homolog 31.9e-1836.96Show/hide
Query:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLA-GPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD
        + +I+L+++I F      +  ++      V   N+L  G  LN+HC+S DDDLG+ I+    S+SF FR ++ GTT F C F W  G+   F IY+  RD
Subjt:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLA-GPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD

Query:  ANR----CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
          R    C +CIW+I   GPC+    D   +N+C+ WN
Subjt:  ANR----CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

Arabidopsis top hitse value%identityAlignment
AT1G04645.1 Plant self-incompatibility protein S1 family3.0e-2747.62Show/hide
Query:  TTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWEIYRDGPCLMHPKDTGTYN
        T VT  N + GP L +HC+SK DDLG+H++ F++ Y F F+PN+W +T F CSFQW   +  +F IY+  RD   C DC WEI  DGPC +     G   
Subjt:  TTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDCIWEIYRDGPCLMHPKDTGTYN

Query:  MCFPW
         CFPW
Subjt:  MCFPW

AT1G26799.1 Plant self-incompatibility protein S1 family2.5e-1833.57Show/hide
Query:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAG-PVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD
        L+ +F++ ++  +G H++ + I L     V   N L     L VHC +K+ DLG+  +    S+ F FR N+  TT ++C+F+W  G I  F I+   RD
Subjt:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAG-PVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD

Query:  ANR------CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
         N       C +CIW IY   PC    K  G +++CF W+
Subjt:  ANR------CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN

AT3G16970.1 Plant self-incompatibility protein S1 family1.6e-2042.48Show/hide
Query:  PETTVTTINKLAGPV-LNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDAN----RCTDCIWEIYRDGPCLMHP
        P TTV   N L G + L  HC+SK+DDLG   +    ++SF FRP+V+G T F C F W   E+H F IY   RD       C  C W+I +DGPC ++ 
Subjt:  PETTVTTINKLAGPV-LNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDAN----RCTDCIWEIYRDGPCLMHP

Query:  KDTGTYNMCFPWN
        K++  +++C PWN
Subjt:  KDTGTYNMCFPWN

AT4G16195.1 Plant self-incompatibility protein S1 family1.3e-1939.02Show/hide
Query:  AAEESISLLPETTVTTINKLAGPV-LNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDA---NRCTD--CIWEI
        ++  S+    + TV   N L   + L  HC+SKDDDLG   ++   S+SFSF    +G T + CSF W   E H+F IY  HRD+   N+C    C+W+I
Subjt:  AAEESISLLPETTVTTINKLAGPV-LNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDA---NRCTD--CIWEI

Query:  YRDGPCLMHPKDTGTYNMCFPWN
         R+GPC  +  +T  +++C+PWN
Subjt:  YRDGPCLMHPKDTGTYNMCFPWN

AT5G12060.1 Plant self-incompatibility protein S1 family1.3e-1936.96Show/hide
Query:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLA-GPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD
        + +I+L+++I F      +  ++      V   N+L  G  LN+HC+S DDDLG+ I+    S+SF FR ++ GTT F C F W  G+   F IY+  RD
Subjt:  LALIFLVLQILFIGMHAAEESISLLPETTVTTINKLA-GPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRD

Query:  ANR----CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN
          R    C +CIW+I   GPC+    D   +N+C+ WN
Subjt:  ANR----CTDCIWEIYRDGPCLMHPKDTGTYNMCFPWN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCATCCTTAGCACTTATATTCTTGGTTTTACAAATATTGTTCATCGGCATGCATGCTGCTGAAGAATCAATCTCACTTTTGCCAGAAACAACAGTGACCACTAT
TAATAAATTGGCTGGCCCAGTGCTAAACGTTCATTGTAGATCAAAAGACGATGACTTGGGAGTCCATATCATAGAGTTTGAACGCAGCTACTCCTTTAGCTTTAGACCTA
ATGTTTGGGGCACAACGCAATTTTCTTGCAGCTTTCAATGGGTCCAAGGCGAGATCCACAACTTCTCAATCTACAATTTTCACAGAGATGCAAATCGTTGCACTGACTGC
ATTTGGGAAATTTATCGAGATGGCCCTTGTTTGATGCACCCAAAAGACACTGGAACTTATAATATGTGCTTCCCTTGGAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTCATCCTTAGCACTTATATTCTTGGTTTTACAAATATTGTTCATCGGCATGCATGCTGCTGAAGAATCAATCTCACTTTTGCCAGAAACAACAGTGACCACTAT
TAATAAATTGGCTGGCCCAGTGCTAAACGTTCATTGTAGATCAAAAGACGATGACTTGGGAGTCCATATCATAGAGTTTGAACGCAGCTACTCCTTTAGCTTTAGACCTA
ATGTTTGGGGCACAACGCAATTTTCTTGCAGCTTTCAATGGGTCCAAGGCGAGATCCACAACTTCTCAATCTACAATTTTCACAGAGATGCAAATCGTTGCACTGACTGC
ATTTGGGAAATTTATCGAGATGGCCCTTGTTTGATGCACCCAAAAGACACTGGAACTTATAATATGTGCTTCCCTTGGAACTAG
Protein sequenceShow/hide protein sequence
MNSSLALIFLVLQILFIGMHAAEESISLLPETTVTTINKLAGPVLNVHCRSKDDDLGVHIIEFERSYSFSFRPNVWGTTQFSCSFQWVQGEIHNFSIYNFHRDANRCTDC
IWEIYRDGPCLMHPKDTGTYNMCFPWN