; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G02060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
Genome locationClcChr04:6490712..6496836
RNA-Seq ExpressionClc04G02060
SyntenyClc04G02060
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR009044 - ssDNA-binding transcriptional regulator


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146395.1 RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis sativus]3.6e-0690.62Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVL NHVEEIDKAVNENSSGD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
XP_008442140.1 PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis melo]3.6e-0690.62Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVL NHVEEIDKAVNENSSGD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
XP_022932999.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita moschata]6.1e-0687.5Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVLRNHV+EIDKAVNENS GD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
XP_023543027.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pepo subsp. pepo]6.1e-0687.5Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVLRNHV+EIDKAVNENS GD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
XP_038881105.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hispida]5.5e-0793.75Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVLRNHVEEIDKAVNENSSGD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
TrEMBL top hitse value%identityAlignment
A0A0A0L2F1 PC4 domain-containing protein1.7e-0690.62Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVL NHVEEIDKAVNENSSGD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
A0A1S3B4K6 RNA polymerase II transcriptional coactivator KIWI isoform X11.7e-0690.62Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVL NHVEEIDKAVNENSSGD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
A0A6J1D5M3 RNA polymerase II transcriptional coactivator KIWI-like isoform X18.6e-0684.38Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLS+DQWNVLRNHVEEIDKAVNENS G+
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
A0A6J1EYI2 RNA polymerase II transcriptional coactivator KIWI-like isoform X12.9e-0687.5Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVLRNHV+EIDKAVNENS GD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
A0A6J1IRG1 RNA polymerase II transcriptional coactivator KIWI-like isoform X11.1e-0584.38Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
        ++GISLSLDQWNVLRNHV+EIDKAV+ENS GD
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G09240.1 ssDNA-binding transcriptional regulator5.5e-0568.97Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENS
        ++GISLSL+QWN LRNH E+IDKA++E S
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENS
AT5G09250.1 ssDNA-binding transcriptional regulator9.4e-0562.07Show/hide
Query:  QEGISLSLDQWNVLRNHVEEIDKAVNENS
        ++GISLS+DQWN LRNH E+I+KA+++ S
Subjt:  QEGISLSLDQWNVLRNHVEEIDKAVNENS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGATAAACAAGAAATTAGGGAAAACCTGATGGAGGGGGCTGTGACCATATCAAGTATCGGACCAAAAAGCGGTGGGTGCACCATTCCTAGGCTTGCAATGAA
TATTATGATAAATAAGGCTAGAGGAAGTTTCAAAAGAGCTTCTCAGTTCCACCACTTTGGTAGGAACGTGAAAGGACGTATAATATGTGGGCAGGTTGGACAAGATAGCA
TTCAAGAGGGTATCTCGCTATCTTTGGATCAGTGGAACGTTCTCCGAAATCATGTAGAAGAAATTGACAAGGCTGTTAATGAAAACTCGTCAGGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAAGATAAACAAGAAATTAGGGAAAACCTGATGGAGGGGGCTGTGACCATATCAAGTATCGGACCAAAAAGCGGTGGGTGCACCATTCCTAGGCTTGCAATGAA
TATTATGATAAATAAGGCTAGAGGAAGTTTCAAAAGAGCTTCTCAGTTCCACCACTTTGGTAGGAACGTGAAAGGACGTATAATATGTGGGCAGGTTGGACAAGATAGCA
TTCAAGAGGGTATCTCGCTATCTTTGGATCAGTGGAACGTTCTCCGAAATCATGTAGAAGAAATTGACAAGGCTGTTAATGAAAACTCGTCAGGAGATTAGAGCAGGCAT
CTTTTGTTGATATTAGTAGCAAGTGTATTGCTCTGTAGGATTATTCTGCTATATGACGTCGAAACTTTGATCTTTTGTACAGCCAATGGGCTTGTTTTTGGTGGAAATGA
AGACCACTGAGCAGGTAACTTAGCATTTGTATTTACATTATCACTGTATTGACATTTTGAATTGTAGACCAGAGACATGATATTATTATGATATAGTATGGCATAACTGA
CAATATTACTATTCTCAATTAGTGGATAATTGGGTATCAAATTGACATTTTCATCAGTAGTCTGAATAGGTTACAGCAATTCTCAGAGATATTTAGTCCAAGGTGCTAAC
TACTTTAAACCTCTTTGCCATAAAATTCTAACTACTTGGTTATTACATATTTAGCTTCAATGCCCTCAGTTCTTGAGCCCACAAAGTGTAGCTTGAATTCTTTGCTACAA
CATCTTTAGAAACCTCCTTTCTTTCAATCAATCCTCTGGCATACCTTTCAAAGTTCTCTAGACTTTTCCATATTGGAGCCAACTTTCTCACATCTCCTTCACATTTAATG
CTTTCCAGGAGGTCTTTTGCTTCCTCCAACCTTGCCCAAAAGCATGAATCTTGAGTTAAGCTTGCATATTTCATTCTATGAGTATTCCCTTCCTCTGTAACTTCTCTCCC
TCTCCACCATTTGTCAAAAATCTCATATCTTCTCTCTCTTCCGTATTTCAAATAATGACCTTGGACAAGGTGCTTATCACGACGGTAATATTCCGCAATGTCCAATGGCT
CTACCAGGAGTTTGTAGAAATGTGAAGCATTGACCCACTTTGCCCTTGTGTTAAAATCTGGAGGAAGCTCATTGTTCTCCCACATGTCGATCACTCTGTTCCAGAATGTT
GCGAGCTTGTGCCTGTTCATGTTTACTCGAGCATGTCTTACTGAAGCATCTACTTTCTTGAAGCAATCGTAGTAACCCAATTGGTCATCCGCTTCATCACAAGAGGCTTT
GTACCATTCTATCTCAGCTCTGTAAGGTGTAATCTTTGATAAGCTTATAGCTAGTTTTGCAGAATTCAAGTTCGGTGTTTGTCCTATTCTCCTTGCTGTTCTCAAGCTAT
GTTCGGCCACTCGAGCAGCTTCATCCTGCAATTTTGAAATAAGCTCTAGTTAGTTCTAAAATCAAAGTTGTAGGTTCTGTTATAAGGAAAGTTGAAGGTTTTATTACTTG
GAAAGGTATTCCTGCTGACTGCAATGCTAGAGCAAGCCCTGCTTCATAGCTTGAATTAGGAAGACACTCTGTGGTGAAGCTTTTCCTCTCCATACATTCAACTCCAACCT
TTTTCACATAATCTCCATAATTGAGATGGTCCTCAATGCTCAAGTTTGGAGCACTTGTTTTGAGCATCAAATAGAGCATCTTCAGAACGGATATGGCATTATCCAAACAA
ATTGCACCATGTTCCGAGCAAAAGAAGAAGTTCCCAAATGGCCAAAACTGACTTCGTACCGACCCCTCTCCTGGGTTAGATATCGTGTTGGAGTGAGCCAATACGACCTG
GAAGAGCTTGTCTTTCTCTCTTTCTGGCAATTGGGCAGCAAGCTTCCCAAACTGTGGAGAGCACATTGACAAATGCCAATATCTAATCAGGATATGGAGCTTGGGGGCGA
GAGAGGAAAGTGGAGTAGAGAGAAGCCTTGGCATAATGTCATGGCTCGAGACTACGTGGCAGAACTTTCCACACCATCGTTCTCTTTGAATGGCTCTTGAAAGTGATTCG
TTGCCTATTAATGGGGAGCCAAAGGTGATGCATAGAATTGGGTGATGTGTTGTTTTGGTATGAAAGAAAGAGAGCAGCCATAGTGTACATAATGTGGCTGCTGCTCCTCC
AAGTGAATGACCTGTAATTACTATTGACTTGCTTTTCTCCATTACTTTTGTCATCTGCAACATTTGAG
Protein sequenceShow/hide protein sequence
MKEDKQEIRENLMEGAVTISSIGPKSGGCTIPRLAMNIMINKARGSFKRASQFHHFGRNVKGRIICGQVGQDSIQEGISLSLDQWNVLRNHVEEIDKAVNENSSGD