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Clc04G02065 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02065
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
Genome locationClcChr04:6503724..6504153
RNA-Seq ExpressionClc04G02065
SyntenyClc04G02065
Gene Ontology termsGO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR003173 - Transcriptional coactivator p15 (PC4), C-terminal
IPR009044 - ssDNA-binding transcriptional regulator
IPR045125 - RNA polymerase II transcriptional coactivator Sub1/Tcp4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603408.1 RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia]7.2e-3290.91Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MSARGKRKD+EDH SEGD PP KTF+KDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG+S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

KAG7033606.1 RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma]2.0e-3486.36Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLSHHPLLLLLSLS
        MSARGKRKD+EDH SEGD PP KTF+KDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG SHH LL  L  S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLSHHPLLLLLSLS

XP_023518433.1 RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. pepo]2.5e-3292.21Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MSARGKRKD+EDHASEGD PP KTFKKDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKG+S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

XP_038881105.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hispida]5.9e-3497.4Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MSARGKRKDEEDHASEGD PPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG+S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

XP_038881106.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Benincasa hispida]2.9e-3397.37Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGL
        MSARGKRKDEEDHASEGD PPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG+
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGL

TrEMBL top hitse value%identityAlignment
A0A6J1D5M3 RNA polymerase II transcriptional coactivator KIWI-like isoform X13.0e-3189.61Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MSARGKRKD+++HASEGD PP KT KKDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG+S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

A0A6J1D8A4 RNA polymerase II transcriptional coactivator KIWI-like isoform X23.0e-3189.61Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MSARGKRKD+++HASEGD PP KT KKDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG+S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

A0A6J1EHI0 RNA polymerase II transcriptional coactivator KIWI-like1.7e-3189.61Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MSARGKRKD+EDHASEGD PP KT KKDS++TDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKG+S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

A0A6J1EYI2 RNA polymerase II transcriptional coactivator KIWI-like isoform X11.7e-3189.61Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MSARGKRKD+EDH  EGD PP KTF+KDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG+S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

A0A6J1HRT2 RNA polymerase II transcriptional coactivator KIWI-like isoform X16.0e-3290.91Show/hide
Query:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MSARGKRKD+EDHASEGD PP KTFKKDS++TDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKG S
Subjt:  MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

SwissProt top hitse value%identityAlignment
O65154 RNA polymerase II transcriptional coactivator KIWI1.3e-2065.06Show/hide
Query:  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MS+RGKRKDE+    D  SE   P  K  K   DSD +D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKG+S
Subjt:  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

O65155 RNA polymerase II transcriptional coactivator KELP7.6e-0842.86Show/hide
Query:  KDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        K+EED    GD    K   K+ DD  ++++C +S  RRV ++ ++GK +V IRE+Y KDGK++P  KG+S
Subjt:  KDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

P53999 Activated RNA polymerase II transcriptional coactivator p153.0e-0433.85Show/hide
Query:  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGLSHHP
        G+   + +  K S  + +  + +I K R V VR+++GK+++DIRE+++  +G+  PG+KG+S +P
Subjt:  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGLSHHP

Q4R947 Activated RNA polymerase II transcriptional coactivator p153.0e-0433.85Show/hide
Query:  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGLSHHP
        G+   + +  K S  + +  + +I K R V VR+++GK+++DIRE+++  +G+  PG+KG+S +P
Subjt:  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGLSHHP

Q5R6D0 Activated RNA polymerase II transcriptional coactivator p153.0e-0433.85Show/hide
Query:  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGLSHHP
        G+   + +  K S  + +  + +I K R V VR+++GK+++DIRE+++  +G+  PG+KG+S +P
Subjt:  GDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGLSHHP

Arabidopsis top hitse value%identityAlignment
AT5G09240.1 ssDNA-binding transcriptional regulator2.0e-1145.88Show/hide
Query:  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGLS
        MS  GKRKDE+  A      SE   PP K   K +D+ ++I +C + KNRRV VRN  G+I + IR+F+VKDG  +P   K+G+S
Subjt:  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGLS

AT5G09240.2 ssDNA-binding transcriptional regulator2.0e-1145.88Show/hide
Query:  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGLS
        MS  GKRKDE+  A      SE   PP K   K +D+ ++I +C + KNRRV VRN  G+I + IR+F+VKDG  +P   K+G+S
Subjt:  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGLS

AT5G09240.3 ssDNA-binding transcriptional regulator7.5e-1146.75Show/hide
Query:  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP
        MS  GKRKDE+  A      SE   PP K   K +D+ ++I +C + KNRRV VRN  G+I + IR+F+VKDG  +P
Subjt:  MSARGKRKDEEDHA------SEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP

AT5G09250.1 ssDNA-binding transcriptional regulator9.5e-2265.06Show/hide
Query:  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS
        MS+RGKRKDE+    D  SE   P  K  K   DSD +D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKG+S
Subjt:  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLS

AT5G09250.2 ssDNA-binding transcriptional regulator4.7e-2165.43Show/hide
Query:  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG
        MS+RGKRKDE+    D  SE   P  K  K   DSD +D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKG
Subjt:  MSARGKRKDEE----DHASEGDVPPSKTFK--KDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCGAGAGGAAAGCGAAAGGACGAGGAAGATCACGCATCCGAGGGAGATGTTCCTCCTTCCAAGACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTAGT
CTGCGAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGA
AAGGTTTATCCCATCATCCTCTTCTTCTTCTTCTCTCTCTATCTCGCAATGGATGA
mRNA sequenceShow/hide mRNA sequence
GCATTCAGTTGGAGAGTGTTTGAAGAGTGAGTTGTGAAGAACAACAAAAAAACAAGCTAAAAGGGAAGGAAGAAATGTCTGCGAGAGGAAAGCGAAAGGACGAGGAAGAT
CACGCATCCGAGGGAGATGTTCCTCCTTCCAAGACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTAGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTCAG
GAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGTTTATCCCATCATCCTCTTCTTCTTCTTCTCT
CTCTATCTCGCAATGGATGA
Protein sequenceShow/hide protein sequence
MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLSHHPLLLLLSLSRNG