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Clc04G02160 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02160
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box protein
Genome locationClcChr04:6887671..6888258
RNA-Seq ExpressionClc04G02160
SyntenyClc04G02160
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579359.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]3.0e-3688.3Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        MQTSSA SAAHLLAQGVEA+LPKQKRN+AIVEFKKAMVAHKRRSKA QE KGS+QLPQDVLLHIFRFLD+ SLVSA LVCRSWN AA+DEYLWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

XP_022157180.1 F-box protein At5g52880 [Momordica charantia]3.0e-3690.22Show/hide
Query:  SSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL
        SSA SAAHLLAQGVEAA PK+KRN+AIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLD+ SLVSA LVCRSWNVAA+DE+LWQL
Subjt:  SSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL

XP_022922153.1 F-box protein At5g52880 isoform X2 [Cucurbita moschata]3.0e-3688.3Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        MQTSSA SAAHLLAQGVEA+LPKQKRN+AIVEFKKAMVAHKRRSKA QE KGS+QLPQDVLLHIFRFLD+ SLVSA LVCRSWN AA+DEYLWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

XP_038874449.1 F-box protein At5g52880 isoform X1 [Benincasa hispida]2.6e-4095.79Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL
        MQTSSAASAAHLLAQGVEAALPKQKRN+AIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDV+SLVSA LVCRSWNVAA+DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL

XP_038874450.1 F-box protein At5g52880 isoform X2 [Benincasa hispida]2.6e-4095.79Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL
        MQTSSAASAAHLLAQGVEAALPKQKRN+AIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDV+SLVSA LVCRSWNVAA+DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL

TrEMBL top hitse value%identityAlignment
A0A0A0KNE5 F-box domain-containing protein1.9e-3687.37Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL
        MQTSSAASAA LLA+ VEAALPKQKRN+ IVEFKKAMV HKRR+KAHQEEKGS QLPQDVLLHIFRF+DV+SLVSA LVCRSWNVAA DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL

A0A5A7TKV8 F-box protein1.9e-3688.42Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL
        MQTSSAASAA LLAQ VEAALPKQKRN+ IVE+KKAMV HKRRSKAHQEEKGS QLPQDVLLHIFRFLDV+SL SA LVCRSWNVAA+DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL

A0A6J1DSD8 F-box protein At5g528801.4e-3690.22Show/hide
Query:  SSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL
        SSA SAAHLLAQGVEAA PK+KRN+AIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLD+ SLVSA LVCRSWNVAA+DE+LWQL
Subjt:  SSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL

A0A6J1E2E9 F-box protein At5g52880 isoform X11.4e-3688.3Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        MQTSSA SAAHLLAQGVEA+LPKQKRN+AIVEFKKAMVAHKRRSKA QE KGS+QLPQDVLLHIFRFLD+ SLVSA LVCRSWN AA+DEYLWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

A0A6J1E5S5 F-box protein At5g52880 isoform X21.4e-3688.3Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        MQTSSA SAAHLLAQGVEA+LPKQKRN+AIVEFKKAMVAHKRRSKA QE KGS+QLPQDVLLHIFRFLD+ SLVSA LVCRSWN AA+DEYLWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

SwissProt top hitse value%identityAlignment
A8XT88 F-box/SPRY domain-containing protein 13.1e-0438.98Show/hide
Query:  VAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWN--VAANDEYLWQ
        VA +RR    + E  +++LP  VL  IF++L ++ L SA L C SWN  ++  D  +WQ
Subjt:  VAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWN--VAANDEYLWQ

P34284 F-box/LRR-repeat protein fbxl-13.1e-0448.72Show/hide
Query:  LPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        LP++VLL +F FLD ++L  +  VCRSW++ A D   WQ
Subjt:  LPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

Q2T9S7 F-box only protein 76.9e-0437.93Show/hide
Query:  MVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        ++A  R++    +  G   LP ++ L IFR LDVRS++S   VCR   + +ND+ LW+
Subjt:  MVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

Q9FLX3 F-box protein At5g528806.2e-2158.95Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEK-GSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        + TS+A SAA+LL + VEA LPKQK+N AIVEFK+A VA KRRSK  +EE      LPQD+L+HIF FL++ SLVS+  V RSWN A ++  LWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEK-GSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

Arabidopsis top hitse value%identityAlignment
AT5G45360.1 F-box family protein4.2e-0439.29Show/hide
Query:  HKRRSKAHQEEKG-SAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        +K ++ A + E G    +P ++  HI +FL    LVS  LVC+  N AA DE LW+
Subjt:  HKRRSKAHQEEKG-SAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

AT5G48170.1 F-box family protein9.3e-0435.71Show/hide
Query:  AHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        ++ +R + +Q    S     DVL+ I R LD  SL SA  VCR W+  A ++ +W+
Subjt:  AHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ

AT5G52880.1 F-box family protein4.4e-2258.95Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEK-GSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ
        + TS+A SAA+LL + VEA LPKQK+N AIVEFK+A VA KRRSK  +EE      LPQD+L+HIF FL++ SLVS+  V RSWN A ++  LWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEK-GSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGACGAGCTCTGCTGCTTCAGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGCTTTGCCTAAGCAAAAGAGAAATGCAGCGATAGTAGAATTTAAGAAAGCAAT
GGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAACTCCCTCAAGACGTTCTCCTCCACATCTTCCGCTTTCTAGATGTTCGATCTTTAG
TTTCAGCTAGGCTAGTATGCCGGTCGTGGAATGTAGCAGCAAATGATGAATATTTGTGGCAGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGACGAGCTCTGCTGCTTCAGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGCTTTGCCTAAGCAAAAGAGAAATGCAGCGATAGTAGAATTTAAGAAAGCAAT
GGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAACTCCCTCAAGACGTTCTCCTCCACATCTTCCGCTTTCTAGATGTTCGATCTTTAG
TTTCAGCTAGGCTAGTATGCCGGTCGTGGAATGTAGCAGCAAATGATGAATATTTGTGGCAGTTGTAG
Protein sequenceShow/hide protein sequence
MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSARLVCRSWNVAANDEYLWQL