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Clc04G02240 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02240
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSWIB domain-containing protein
Genome locationClcChr04:7240107..7246672
RNA-Seq ExpressionClc04G02240
SyntenyClc04G02240
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN55149.2 hypothetical protein Csa_012337 [Cucumis sativus]9.5e-4494.74Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]8.5e-4594.74Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MKM +TDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDPTNKNVV+CD+KLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]3.0e-4292.63Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFK VWSYIKTNNLQDPTNKNVVICD+KLKSILLGK K+ELAELPALIKLHFPKNPK
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

XP_031739586.1 upstream activation factor subunit spp27 [Cucumis sativus]9.5e-4494.74Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]2.9e-4596.84Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MKM ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

TrEMBL top hitse value%identityAlignment
A0A0A0L2E1 SWIB domain-containing protein4.6e-4494.74Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

A0A1S3BL41 upstream activation factor subunit spp274.1e-4594.74Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MKM +TDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDPTNKNVV+CD+KLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

A0A6J1ELR1 upstream activation factor subunit UAF301.5e-4292.63Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFK VWSYIKTNNLQDPTNKNVVICD+KLKSILLGK K+ELAELPALIKLHFPKNPK
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

A0A6J1HWJ0 protein TRI1 isoform X12.5e-4292.63Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFK VWSYIKTNNLQDPTNKNVVICD+KL+SILLGK KVELAELPALIKLHFPKNPK
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

A0A6J1HY33 upstream activation factor subunit UAF30 isoform X22.5e-4292.63Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        MK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFK VWSYIKTNNLQDPTNKNVVICD+KL+SILLGK KVELAELPALIKLHFPKNPK
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp278.7e-0848.08Show/hide
Query:  VNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSI
        + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CDDKLKS+
Subjt:  VNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSI

Q05024 Protein TRI11.1e-0530.53Show/hide
Query:  DNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPKMPKSHE
        D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CD+K++ I  GK K+ +  +  L+  H   NP     HE
Subjt:  DNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPKMPKSHE

Q08747 Upstream activation factor subunit UAF302.1e-0632.05Show/hide
Query:  VNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPKM
        V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CD+KL+ ++LGK    + E+  ++  H  +  K+
Subjt:  VNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPKM

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein5.4e-1346.38Show/hide
Query:  LREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKN
        L  F G+ +++R    K VW Y+K +NLQ+P NK  + CDDKLK+I  GK KV + E+  L+  HFPK+
Subjt:  LREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKN

AT2G35605.1 SWIB/MDM2 domain superfamily protein1.3e-1441.77Show/hide
Query:  LIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKN
        ++ +V +   L  F+G+++VSR    K +W YIK NNLQ+P NK  ++CD++LK+I  GK  V   E+  L+  HFPK+
Subjt:  LIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKN

AT3G03590.1 SWIB/MDM2 domain superfamily protein1.5e-1034.07Show/hide
Query:  TDNPKK----LANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPK
        +D+P K       +  +  +   L +F+G  + SR    K +W+YIK+++LQ+P +K  + CD+ LK I  GK KV   E+  L+  HF K
Subjt:  TDNPKK----LANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPK

AT4G26810.1 SWIB/MDM2 domain superfamily protein2.3e-4082.11Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        +K  ITDNPKKL NLIDLVNLPSTLR FVGQSQ+SRLGCF  VWSYIKTNNLQDP NKNVVICD+KLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

AT4G26810.2 SWIB/MDM2 domain superfamily protein2.3e-4082.11Show/hide
Query:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
        +K  ITDNPKKL NLIDLVNLPSTLR FVGQSQ+SRLGCF  VWSYIKTNNLQDP NKNVVICD+KLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATGGGCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTGTTAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCT
GGGATGTTTCAAGTGTGTGTGGTCGTATATCAAAACCAACAATCTTCAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTA
AGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAACCCCAAAATGCCTAAATCTCATGAGTACACGCTAACTTTCGGGACATTTGAG
CATTCTGTGACTGTTCCCACCAGCGAGAGCGAGACTAGTGAAAGCAAGACTAATGAGACGATACCAAAGAGCGAGACGAGCGAGGGCAAGACTAGTGAGAGCGAGACTAA
CAAACTTCAGAAGAAGATTGAAGAAGGTGTTCTTGCGGATTTTGGACGAAATTTGACTCATGTTGATGTTGAAAATGAAGCTGGAACAGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATGGGCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTGTTAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCT
GGGATGTTTCAAGTGTGTGTGGTCGTATATCAAAACCAACAATCTTCAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTA
AGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAACCCCAAAATGCCTAAATCTCATGAGTACACGCTAACTTTCGGGACATTTGAG
CATTCTGTGACTGTTCCCACCAGCGAGAGCGAGACTAGTGAAAGCAAGACTAATGAGACGATACCAAAGAGCGAGACGAGCGAGGGCAAGACTAGTGAGAGCGAGACTAA
CAAACTTCAGAAGAAGATTGAAGAAGGTGTTCTTGCGGATTTTGGACGAAATTTGACTCATGTTGATGTTGAAAATGAAGCTGGAACAGAGGAATGA
Protein sequenceShow/hide protein sequence
MKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPKMPKSHEYTLTFGTFE
HSVTVPTSESETSESKTNETIPKSETSEGKTSESETNKLQKKIEEGVLADFGRNLTHVDVENEAGTEE