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Clc04G02430 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02430
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAspartate carbamoyltransferase
Genome locationClcChr04:8012223..8015724
RNA-Seq ExpressionClc04G02430
SyntenyClc04G02430
Gene Ontology termsGO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process (biological process)
GO:0006520 - cellular amino acid metabolic process (biological process)
GO:0044205 - 'de novo' UMP biosynthetic process (biological process)
GO:0004070 - aspartate carbamoyltransferase activity (molecular function)
GO:0016597 - amino acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5202109.1 Aspartate carbamoyltransferase protein [Thalictrum thalictroides]1.9e-1078.26Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDVRHAVVMHPLPRLDKI
        MKDDIKDYLT + V+WEE   LMEVA ECDV+HAVVMHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDVRHAVVMHPLPRLDKI
XP_004149350.1 aspartate carbamoyltransferase, chloroplastic [Cucumis sativus]1.4e-0848.81Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKILL
        MKDDIKDYLT QDVKWEECD L EVA ECDV                                    RHAVVMHPLPRLD+I +
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKILL
XP_008449144.1 PREDICTED: aspartate carbamoyltransferase, chloroplastic [Cucumis melo]2.8e-0951.22Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIKDYLT QDVKWEECD LMEVA ECDV                                    RHAVVMHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
XP_023553188.1 aspartate carbamoyltransferase, chloroplastic [Cucurbita pepo subsp. pepo]3.4e-0746.34Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIK+YL+ Q VKWEEC+ LMEVA ECDV                                    RHAVVMHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
XP_038905711.1 aspartate carbamoyltransferase, chloroplastic [Benincasa hispida]2.8e-0951.22Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIKDYLT QDVKWEECD LMEVA ECDV                                    RHAVVMHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
TrEMBL top hitse value%identityAlignment
A0A0A0L2Y6 Aspartate carbamoyltransferase6.6e-0948.81Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKILL
        MKDDIKDYLT QDVKWEECD L EVA ECDV                                    RHAVVMHPLPRLD+I +
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKILL
A0A1S3BLD7 Aspartate carbamoyltransferase1.3e-0951.22Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIKDYLT QDVKWEECD LMEVA ECDV                                    RHAVVMHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
A0A5A7UNJ2 Aspartate carbamoyltransferase1.3e-0951.22Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIKDYLT QDVKWEECD LMEVA ECDV                                    RHAVVMHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
A0A6J1HJC0 Aspartate carbamoyltransferase2.1e-0746.34Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIK+YL+ Q VKWEEC+ LMEVA ECDV                                    RHAVVMHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
A0A7J6WXD7 Aspartate carbamoyltransferase9.3e-1178.26Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDVRHAVVMHPLPRLDKI
        MKDDIKDYLT + V+WEE   LMEVA ECDV+HAVVMHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDVRHAVVMHPLPRLDKI
SwissProt top hitse value%identityAlignment
P49077 Aspartate carbamoyltransferase, chloroplastic3.0e-0639.02Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIKDYLT   V+WEE   LMEVA +CDV                                    + A++MHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
Q43064 Aspartate carbamoyltransferase 3, chloroplastic1.2e-0742.68Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIKDYLT + V WEE   L+EVA ECDV                                    RHAV+MHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
Q43086 Aspartate carbamoyltransferase 1, chloroplastic1.3e-0640.24Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIK+YLT + V+WEE   LMEVA +CDV                                     HAVVMHPLP+LD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
Q43087 Aspartate carbamoyltransferase 2, chloroplastic1.2e-0742.68Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIKDYLT + V WEE   L+EVA ECDV                                    RHAV+MHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
Q9LD61 Aspartate carbamoyltransferase, chloroplastic3.5e-0739.29Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKILL
        MKDDIK+YLT Q V+WEE   L+EVA +CDV                                    +HAV+MHPLPRLD+I +
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKILL
Arabidopsis top hitse value%identityAlignment
AT3G20330.1 PYRIMIDINE B2.1e-0739.02Show/hide
Query:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI
        MKDDIKDYLT   V+WEE   LMEVA +CDV                                    + A++MHPLPRLD+I
Subjt:  MKDDIKDYLTLQDVKWEECDKLMEVALECDV------------------------------------RHAVVMHPLPRLDKI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGATGATATAAAAGACTATTTGACATTACAAGATGTGAAGTGGGAAGAATGTGACAAATTGATGGAAGTTGCATTAGAGTGTGATGTGAGACATGCTGTGGTCAT
GCATCCCCTACCCAGGCTTGATAAGATATTGTTGGTTACAATGGTCACGGCCACACTTACAACCATTGCGGTGGGATCGAACATTCACCTTCAAGAAAGGAATACCTTGG
GATGCCCAAGTACCTTCTCCGAGTCCATCAGTACTGGGTTCCTCGGAAACTCAAATGCCTTCTCAATGTCCCTCAGCATTGAGCTCCGTTTAAGTCACAGGGTTGCCCAC
ATGCCTTCTCAATGTCCCTCAGCATTGGGTCCCTTGGAAAACATTTTAGAAACAGTGCAAACAGTTCATTGTAAAACCTTTCGTGGAAAACAGAGCGTTTCTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGATGATATAAAAGACTATTTGACATTACAAGATGTGAAGTGGGAAGAATGTGACAAATTGATGGAAGTTGCATTAGAGTGTGATGTGAGACATGCTGTGGTCAT
GCATCCCCTACCCAGGCTTGATAAGATATTGTTGGTTACAATGGTCACGGCCACACTTACAACCATTGCGGTGGGATCGAACATTCACCTTCAAGAAAGGAATACCTTGG
GATGCCCAAGTACCTTCTCCGAGTCCATCAGTACTGGGTTCCTCGGAAACTCAAATGCCTTCTCAATGTCCCTCAGCATTGAGCTCCGTTTAAGTCACAGGGTTGCCCAC
ATGCCTTCTCAATGTCCCTCAGCATTGGGTCCCTTGGAAAACATTTTAGAAACAGTGCAAACAGTTCATTGTAAAACCTTTCGTGGAAAACAGAGCGTTTCTCAATAA
Protein sequenceShow/hide protein sequence
MKDDIKDYLTLQDVKWEECDKLMEVALECDVRHAVVMHPLPRLDKILLVTMVTATLTTIAVGSNIHLQERNTLGCPSTFSESISTGFLGNSNAFSMSLSIELRLSHRVAH
MPSQCPSALGPLENILETVQTVHCKTFRGKQSVSQ