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Clc04G02450 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02450
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMyb_DNA-bind_3 domain-containing protein
Genome locationClcChr04:8033236..8033862
RNA-Seq ExpressionClc04G02450
SyntenyClc04G02450
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]9.6e-1654.84Show/hide
Query:  SSDEWTKFRDDLAVEMFTQWWRTLSWWKLYCI--WWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIECKVRSLKKQYSAVSEMLGQSGFD
        S   W+K  D   VE             LY +   WR   G+    + QHLE+ILHEKVPGCALN+NTIECKVRSLKKQY+AVSEML QSGF+
Subjt:  SSDEWTKFRDDLAVEMFTQWWRTLSWWKLYCI--WWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIECKVRSLKKQYSAVSEMLGQSGFD

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.8e-3060.15Show/hide
Query:  MGIGAMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMF--------TQWWRTLSWWK-----LYCI--WWRPVGGSTMGHFEQHLERILHEK
        MGI AMLD+ DEEN+ASVG++  HI+FVESS+EWTKFRDDLAVE+            W  +   K     LY +   WR   G+    + QHLE+ILHEK
Subjt:  MGIGAMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMF--------TQWWRTLSWWK-----LYCI--WWRPVGGSTMGHFEQHLERILHEK

Query:  VPGCALNQNTIECKVRSLKKQYSAVSEMLGQSG
        VPGCALN NTIECKVRSLKKQY+AVSEML QSG
Subjt:  VPGCALNQNTIECKVRSLKKQYSAVSEMLGQSG

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]3.4e-2154.92Show/hide
Query:  MGIGAMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWWRTLSWWKLYCI--WWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIEC
        MGIGAM D+ DEEN ASVG++G       S   W+K  D   VE             LY +   WR   G+    + QHLERI HEKV GCALNQNTIEC
Subjt:  MGIGAMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWWRTLSWWKLYCI--WWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIEC

Query:  KVRSLKKQYSAVSEMLGQSGFD
        KVRSLKKQ +AVSEML QSGFD
Subjt:  KVRSLKKQYSAVSEMLGQSGFD

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]1.3e-1556.52Show/hide
Query:  SSDEWTKFRDDLAVEMFTQWWRTLSWWKLYCI--WWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIECKVRSLKKQYSAVSEMLGQSGF
        S   W+K  D   VE             LY +   WR   G+    + Q+LERILHEKVPGCALNQNTIECKVRSLKKQY+AVSEML QSGF
Subjt:  SSDEWTKFRDDLAVEMFTQWWRTLSWWKLYCI--WWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIECKVRSLKKQYSAVSEMLGQSGF

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]5.6e-1657.3Show/hide
Query:  WTKFRDDLAVEMFTQWWRTLSWWKLYCI--WWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIECKVRSLKKQYSAVSEMLGQSGFD
        W+K  D   VE             LY +   WR   G+    + QHLERILHEKVPGC LNQNTIECKVRSLKKQY+ VSEML QSGFD
Subjt:  WTKFRDDLAVEMFTQWWRTLSWWKLYCI--WWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIECKVRSLKKQYSAVSEMLGQSGFD

TrEMBL top hitse value%identityAlignment
A0A2Z6NNS9 Uncharacterized protein3.6e-0834.11Show/hide
Query:  IGAMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWWRTLSWW-------------KLYCIWWRPVGGSTMGHFEQHLERILHEKVPGC
        +GA+ D+ DE       ++G  I  VE S  W+++RD+ A+++F     T   W             KL    W+   GS    + + LE+ +H K PGC
Subjt:  IGAMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWWRTLSWW-------------KLYCIWWRPVGGSTMGHFEQHLERILHEKVPGC

Query:  ALNQNT-IECKVRSLKKQYSAVSEMLGQS
         L  N  IE +V+ LK QYSA+ +MLG S
Subjt:  ALNQNT-IECKVRSLKKQYSAVSEMLGQS

A0A5A7T091 Retrotransposon protein3.9e-0730.51Show/hide
Query:  IKFVESSDEWTKFRDDLAVEMFTQWWRTLS-------WWK------LYCIW-------WRPVGGSTMGHFEQHLERILHEKVPGCALNQNT-IECKVRSL
        I+++E+++EW+++RD+LA  MFT W  + S       W +      + C+        W+   G+    +   L R++ EK+PGC +   T I+C++++L
Subjt:  IKFVESSDEWTKFRDDLAVEMFTQWWRTLS-------WWK------LYCIW-------WRPVGGSTMGHFEQHLERILHEKVPGCALNQNT-IECKVRSL

Query:  KKQYSAVSEMLGQ--SGF
        K+ + A++EM G   SGF
Subjt:  KKQYSAVSEMLGQ--SGF

A0A5A7THQ9 Retrotransposon protein8.8e-0730.08Show/hide
Query:  AMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWW------RTLSWWKLYCIWWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIEC
        A  D +DE +          I ++E+ +EW+++RDDLA EMFT W       R      +    WR   G+    +   L R+   K+PGC ++ +TI+ 
Subjt:  AMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWW------RTLSWWKLYCIWWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIEC

Query:  KVRSLKKQYSAVSEMLGQ--SGF
        +++ +K+ + A+++M G   SGF
Subjt:  KVRSLKKQYSAVSEMLGQ--SGF

A0A5D3D7X4 Retrotransposon protein8.8e-0730.08Show/hide
Query:  AMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWW------RTLSWWKLYCIWWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIEC
        A  D +DE +          I ++E+ +EW+++RDDLA EMFT W       R      +    WR   G+    +   L R+   K+PGC ++ +TI+ 
Subjt:  AMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWW------RTLSWWKLYCIWWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIEC

Query:  KVRSLKKQYSAVSEMLGQ--SGF
        +++ +K+ + A+++M G   SGF
Subjt:  KVRSLKKQYSAVSEMLGQ--SGF

E5GBB2 Retrotransposon protein2.3e-0733.33Show/hide
Query:  IKFVESSDEWTKFRDDLAVEMFTQW----WRTLSWWKLYCIWWRPVGGSTMGHFEQHLERILHEKVPGCALNQNT-IECKVRSLKKQYSAVSEMLGQ--S
        I+++E+++EW+++RDDLA  MFT W      +     +    W+   G+    +   L R++ EK+ GC +   T I+C++++LK+ + A++EMLG   S
Subjt:  IKFVESSDEWTKFRDDLAVEMFTQW----WRTLSWWKLYCIWWRPVGGSTMGHFEQHLERILHEKVPGCALNQNT-IECKVRSLKKQYSAVSEMLGQ--S

Query:  GF
        GF
Subjt:  GF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTGGTGCAATGCTTGACTTGCTCGATGAAGAGAATTATGCATCAGTTGGAGTTAATGGAGCTCATATTAAATTTGTTGAATCCTCGGACGAATGGACCAAGTT
TAGGGACGACTTAGCAGTCGAAATGTTTACTCAATGGTGGAGGACGCTAAGTTGGTGGAAGCTCTATTGTATTTGGTGGAGACCGGTTGGAGGTTCAACAATGGGACATT
TCGAACAGCACTTGGAGCGAATTCTGCATGAGAAAGTGCCTGGTTGCGCACTGAATCAAAACACCATTGAGTGTAAGGTGAGGAGTCTGAAGAAACAATACAGTGCAGTA
TCAGAGATGTTAGGTCAGTCAGGGTTCGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAATTGGTGCAATGCTTGACTTGCTCGATGAAGAGAATTATGCATCAGTTGGAGTTAATGGAGCTCATATTAAATTTGTTGAATCCTCGGACGAATGGACCAAGTT
TAGGGACGACTTAGCAGTCGAAATGTTTACTCAATGGTGGAGGACGCTAAGTTGGTGGAAGCTCTATTGTATTTGGTGGAGACCGGTTGGAGGTTCAACAATGGGACATT
TCGAACAGCACTTGGAGCGAATTCTGCATGAGAAAGTGCCTGGTTGCGCACTGAATCAAAACACCATTGAGTGTAAGGTGAGGAGTCTGAAGAAACAATACAGTGCAGTA
TCAGAGATGTTAGGTCAGTCAGGGTTCGACTAG
Protein sequenceShow/hide protein sequence
MGIGAMLDLLDEENYASVGVNGAHIKFVESSDEWTKFRDDLAVEMFTQWWRTLSWWKLYCIWWRPVGGSTMGHFEQHLERILHEKVPGCALNQNTIECKVRSLKKQYSAV
SEMLGQSGFD