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Clc04G02460 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02460
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr04:8034028..8040461
RNA-Seq ExpressionClc04G02460
SyntenyClc04G02460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]6.5e-1563.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V +  PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1463.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V    PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1463.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V    PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
KAA0048364.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1463.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V    PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
KAA0051057.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1463.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V    PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
TrEMBL top hitse value%identityAlignment
A0A5A7TXW1 Retrotransposon protein5.4e-1563.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V    PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
A0A5A7TZ93 Retrotransposon protein5.4e-1563.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V    PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
A0A5A7U9H2 Retrotransposon protein5.4e-1563.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V    PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
A0A5D3BDX0 Retrotransposon protein5.4e-1563.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V    PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
E5GCB5 Retrotransposon protein3.1e-1563.24Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
        AGWE SAADSR+LRDA+ RP RL+VPK     V +  PNAE FLAPYRG+RYHL +WRG  NA +T++
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.0e-0544.07Show/hide
Query:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRG
        +GWE SA DSRVL DA+ + Y           V     N   FLAP+RG RYHL ++ G
Subjt:  AGWEESAADSRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTATCATGCGTTGAAGGTGTCCTATGCGTTGGAGAAGGCCACCTTGCGTGGAGAGCTGCTGCTATGTGATGAAGGACTGCTGCTATGCGTTGATGAGCTGAAGCT
ATACGTTGATCGGTTTCGTGGTCAAACTAAAGCTGGAACTGTGGGTTTGGCTGCTGTTGCGCAATCCGAGCATGGTCTGGTGTTTGGAGAAGAACGAGCTGAAGAGATCG
AATTTAGGGCTGAAAGTTTAAGGAATTTAAGTGTGAGTAGCGAGACGAGTGTCATTGGTAATGCTAAAGGCTTTACGTCTCACAACTCTCCCTGGGTATCGCTAGGTATC
GCTACTCAGGTGAGTCTCGCTGGTCTCGCTCACCATGGGACCAGTACTGAAGGACTCGGAGAAGGTACTTGGGGCACCCTAGATATGTGTATGTGTAGTTATGCTGATGT
GTTGAGATTACTCCACACAGCTAAAGTTATTTCGACGTTGAGTAGTGTTGAGCCTCGCTCTGCCTCAACTAAGGAAAGGTTTCAGGAAAACCAGTTTATGGTTAACAGTG
GATGTCGTGAGAAGGTTGGTGTCTACTGTCTTCGCACTCACTCCTGGTTCATGAGGGTTAAATCTCTGCTTGATCTCTTCTTTGCAGGGTGGGAAGAGTCTGCAGCCGAT
TCAAGGGTTCTTAGGGATGCGATTTTGCGACCGTACAGATTGAGAGTTCCAAAGGATACTATTACCTATGTGATGCTGGATACCCCCAACGCTGAAGAATTCTTGGCGCC
ATACAGAGGGGAACGATACCATCTCTTCGATTGGCGTGGAGTAGGAAACGCACTGACAACTACAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTATCATGCGTTGAAGGTGTCCTATGCGTTGGAGAAGGCCACCTTGCGTGGAGAGCTGCTGCTATGTGATGAAGGACTGCTGCTATGCGTTGATGAGCTGAAGCT
ATACGTTGATCGGTTTCGTGGTCAAACTAAAGCTGGAACTGTGGGTTTGGCTGCTGTTGCGCAATCCGAGCATGGTCTGGTGTTTGGAGAAGAACGAGCTGAAGAGATCG
AATTTAGGGCTGAAAGTTTAAGGAATTTAAGTGTGAGTAGCGAGACGAGTGTCATTGGTAATGCTAAAGGCTTTACGTCTCACAACTCTCCCTGGGTATCGCTAGGTATC
GCTACTCAGGTGAGTCTCGCTGGTCTCGCTCACCATGGGACCAGTACTGAAGGACTCGGAGAAGGTACTTGGGGCACCCTAGATATGTGTATGTGTAGTTATGCTGATGT
GTTGAGATTACTCCACACAGCTAAAGTTATTTCGACGTTGAGTAGTGTTGAGCCTCGCTCTGCCTCAACTAAGGAAAGGTTTCAGGAAAACCAGTTTATGGTTAACAGTG
GATGTCGTGAGAAGGTTGGTGTCTACTGTCTTCGCACTCACTCCTGGTTCATGAGGGTTAAATCTCTGCTTGATCTCTTCTTTGCAGGGTGGGAAGAGTCTGCAGCCGAT
TCAAGGGTTCTTAGGGATGCGATTTTGCGACCGTACAGATTGAGAGTTCCAAAGGATACTATTACCTATGTGATGCTGGATACCCCCAACGCTGAAGAATTCTTGGCGCC
ATACAGAGGGGAACGATACCATCTCTTCGATTGGCGTGGAGTAGGAAACGCACTGACAACTACAAGATAA
Protein sequenceShow/hide protein sequence
MSYHALKVSYALEKATLRGELLLCDEGLLLCVDELKLYVDRFRGQTKAGTVGLAAVAQSEHGLVFGEERAEEIEFRAESLRNLSVSSETSVIGNAKGFTSHNSPWVSLGI
ATQVSLAGLAHHGTSTEGLGEGTWGTLDMCMCSYADVLRLLHTAKVISTLSSVEPRSASTKERFQENQFMVNSGCREKVGVYCLRTHSWFMRVKSLLDLFFAGWEESAAD
SRVLRDAILRPYRLRVPKDTITYVMLDTPNAEEFLAPYRGERYHLFDWRGVGNALTTTR