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Clc04G02710 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02710
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNucleolar protein 58-like
Genome locationClcChr04:8441550..8442344
RNA-Seq ExpressionClc04G02710
SyntenyClc04G02710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB53755.1 hypothetical protein L484_022412 [Morus notabilis]1.2e-2332.73Show/hide
Query:  PPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVS
        P +IT +I  HGWR FC         +VR+FY   +D  ++ V V   KVPF AR IN+I+ L +  D   +   E T  +L E  +  +A  GA W +S
Subjt:  PPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVS

Query:  PTGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGV-FSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAE
        P G  T     L+  A +W + +  R +P+TH KTV++DRV+  Y I+  I++++  I   +I+    ++ RG L+FP+LI  L+  A++    +    E
Subjt:  PTGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGV-FSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAE

Query:  KMIEVNGVIAHKTLRRLMRG
         ++   G I+  ++ R+ +G
Subjt:  KMIEVNGVIAHKTLRRLMRG

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]3.2e-2432.07Show/hide
Query:  PYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSP
        P+I ++I  H W+ FC+        +VR+FY    D EE+ V V   +V ++   IN ++ L D P  E ++ I++   + +   +  +A  GA+W+VS 
Subjt:  PYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSP

Query:  TGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKM
         G  T   S+L P A +W + +K RL+PTTH KTVS+DR++  + ++   +++VGR+I  +IR   ++  G LFFP+LI  L  NA       +++ EK+
Subjt:  TGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKM

Query:  IEVNGVIAHKTLRRLMRGSQYLPEPTKATKRPHQPVP
             + A    R    G      PT++T++P    P
Subjt:  IEVNGVIAHKTLRRLMRGSQYLPEPTKATKRPHQPVP

XP_038876674.1 chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]8.5e-3356.43Show/hide
Query:  VVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSPTGIKTPAS-SLRPEANLWVYLVKKR
        VVRDFY  R+    D V +    V F+AR+IN IY+++DNP A GNKII+    + MED ++V+ + G KW VS  G+ T AS SL  E  LWVYLVKKR
Subjt:  VVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSPTGIKTPAS-SLRPEANLWVYLVKKR

Query:  LIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGV
        LI TTHDKTVSRDRVMA YCI+R I +DVG++IA Q+R +
Subjt:  LIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGV

XP_038898613.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida]1.6e-3448.37Show/hide
Query:  MIKVGFFPEKAPVPPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTI
        +I++GF+P   P+P  IT II  HGW  F      I P+VV DFY   + E  D V      V F+ + IN +Y++RDNPDA GNKII+    +LM + +
Subjt:  MIKVGFFPEKAPVPPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTI

Query:  RVMAKPGAKWDVSPTGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDR
        +V+A+PG +W VSP GI+T  + SL  +  LWVYLVKK+LIPTTHD+TVS+D+
Subjt:  RVMAKPGAKWDVSPTGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDR

XP_038904385.1 uncharacterized protein LOC120090747 [Benincasa hispida]2.2e-4148.92Show/hide
Query:  MIKVGFFPEKAPVPPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTI
        M+++GF P   P+P + T ++  HGW  F      I P VVR FY  R+   +D V++    VPF+AR+IN +Y+++D PDA GNKII+    + MED +
Subjt:  MIKVGFFPEKAPVPPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTI

Query:  RVMAKPGAKWDVSPTGIKTPASS-LRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQ
        R + + G +W VS  GIKT ASS L PEA LWVYLVK+R+IPT+HDKTVSRDRVMAAYCI   I +DV  +IA Q +    + + Q
Subjt:  RVMAKPGAKWDVSPTGIKTPASS-LRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQ

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)1.2e-2130.77Show/hide
Query:  PYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSP
        P+I ++I  H W+ FC+        +VR+FY    D  E+ V V   +V ++   IN ++ L D P  E ++ IE+     +   +  +A  GA+W+VS 
Subjt:  PYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSP

Query:  TGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKM
         G  T   S+L P A +W + +K  L+PTTH KTVS+DR++  + ++   +++VGR+I  +IR   ++  G LFFP+LI  L  NA       +++ EK+
Subjt:  TGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKM

Query:  IEVNGVIAHKTLRRLMRGSQYLPEPTKATKRPHQPVPPPKPQPQRRG
             + A    R    G      PT++T++P    P      +  G
Subjt:  IEVNGVIAHKTLRRLMRGSQYLPEPTKATKRPHQPVPPPKPQPQRRG

A0A2P5BCG4 Uncharacterized protein (Fragment)1.6e-2432.07Show/hide
Query:  PYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSP
        P+I ++I  H W+ FC+        +VR+FY    D EE+ V V   +V ++   IN ++ L D P  E ++ I++   + +   +  +A  GA+W+VS 
Subjt:  PYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSP

Query:  TGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKM
         G  T   S+L P A +W + +K RL+PTTH KTVS+DR++  + ++   +++VGR+I  +IR   ++  G LFFP+LI  L  NA       +++ EK+
Subjt:  TGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKM

Query:  IEVNGVIAHKTLRRLMRGSQYLPEPTKATKRPHQPVP
             + A    R    G      PT++T++P    P
Subjt:  IEVNGVIAHKTLRRLMRGSQYLPEPTKATKRPHQPVP

A0A2P5BNT0 Uncharacterized protein (Fragment)6.8e-2032.85Show/hide
Query:  VVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSPTGIKT-PASSLRPEANLWVYLVKKR
        +VR+FY    + ++D V V   +VP +A  INTIY L D  D E ++ +E      +   +  +A  GA+W+VS  G+ T   SSL P A +W + +K R
Subjt:  VVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVSPTGIKT-PASSLRPEANLWVYLVKKR

Query:  LIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKMIEVNGVIAHKTLRRLMRGSQYLPEP
        L+PTTH K VS++RV+  Y ++   ++++GR+I  +I    ++  G LFFP+LI+ +  NA        L  E+ +   G I    + R+ +     P  
Subjt:  LIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKMIEVNGVIAHKTLRRLMRGSQYLPEP

Query:  TKATKRP
          ++ RP
Subjt:  TKATKRP

A0A2P5DAQ2 Uncharacterized protein7.8e-2434.95Show/hide
Query:  PPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVS
        PP+I ++I  H W+ FC+        +VR+FY    + ++D V +   +VP +   INTI+ L D P  E ++ +E      +   +  +A  GA+W+VS
Subjt:  PPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVS

Query:  PTGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGN
          G  T   SSL P A +W + +K RL+PTTH KTVS++ V   Y ++   +++VGR+I  +I    ++  G LFFP+LI ++  N
Subjt:  PTGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGN

W9QTD9 Uncharacterized protein6.0e-2432.73Show/hide
Query:  PPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVS
        P +IT +I  HGWR FC         +VR+FY   +D  ++ V V   KVPF AR IN+I+ L +  D   +   E T  +L E  +  +A  GA W +S
Subjt:  PPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKWDVS

Query:  PTGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGV-FSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAE
        P G  T     L+  A +W + +  R +P+TH KTV++DRV+  Y I+  I++++  I   +I+    ++ RG L+FP+LI  L+  A++    +    E
Subjt:  PTGIKT-PASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGV-FSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAE

Query:  KMIEVNGVIAHKTLRRLMRG
         ++   G I+  ++ R+ +G
Subjt:  KMIEVNGVIAHKTLRRLMRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAAGGTGGGATTTTTCCCTGAAAAAGCCCCAGTGCCGCCATACATCACCGAAATAATTGACCACCACGGTTGGAGAAACTTCTGTTCCAGCGCCCCTTGGATCCA
ACCTGAAGTAGTCCGAGATTTTTATAACGAACGCATAGACGAAGAGGAGGACGTGGTGGTGGTGGATGAAACTAAAGTCCCATTCAACGCAAGGGAAATCAATACTATAT
ATGAGTTGAGGGACAACCCGGATGCGGAAGGAAATAAGATTATAGAATCAACTCCAACAAAGTTAATGGAGGACACAATCCGGGTAATGGCGAAGCCAGGGGCTAAGTGG
GATGTTTCACCCACAGGTATAAAAACGCCAGCTAGCAGCCTAAGACCAGAGGCAAACCTGTGGGTGTATTTGGTGAAGAAGCGGCTGATCCCTACAACGCATGACAAGAC
AGTATCAAGGGATCGGGTGATGGCAGCATACTGCATTATGCGTCGCATCACCCTTGATGTTGGACGCATAATTGCAGTGCAGATAAGAGGGGTGTTCAGCAAGCCAAGGG
GCCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGGCAATGCTTCCATCGGAGGGCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAATGGCGTAATC
GCCCACAAGACTCTGCGTCGGTTGATGAGAGGATCACAATATCTGCCAGAGCCTACCAAGGCCACCAAGAGACCTCATCAACCAGTTCCGCCTCCAAAGCCGCAACCGCA
GAGAAGGGGAAGCCGTCCAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTAAGGTGGGATTTTTCCCTGAAAAAGCCCCAGTGCCGCCATACATCACCGAAATAATTGACCACCACGGTTGGAGAAACTTCTGTTCCAGCGCCCCTTGGATCCA
ACCTGAAGTAGTCCGAGATTTTTATAACGAACGCATAGACGAAGAGGAGGACGTGGTGGTGGTGGATGAAACTAAAGTCCCATTCAACGCAAGGGAAATCAATACTATAT
ATGAGTTGAGGGACAACCCGGATGCGGAAGGAAATAAGATTATAGAATCAACTCCAACAAAGTTAATGGAGGACACAATCCGGGTAATGGCGAAGCCAGGGGCTAAGTGG
GATGTTTCACCCACAGGTATAAAAACGCCAGCTAGCAGCCTAAGACCAGAGGCAAACCTGTGGGTGTATTTGGTGAAGAAGCGGCTGATCCCTACAACGCATGACAAGAC
AGTATCAAGGGATCGGGTGATGGCAGCATACTGCATTATGCGTCGCATCACCCTTGATGTTGGACGCATAATTGCAGTGCAGATAAGAGGGGTGTTCAGCAAGCCAAGGG
GCCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGGCAATGCTTCCATCGGAGGGCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAATGGCGTAATC
GCCCACAAGACTCTGCGTCGGTTGATGAGAGGATCACAATATCTGCCAGAGCCTACCAAGGCCACCAAGAGACCTCATCAACCAGTTCCGCCTCCAAAGCCGCAACCGCA
GAGAAGGGGAAGCCGTCCAAGTTGA
Protein sequenceShow/hide protein sequence
MIKVGFFPEKAPVPPYITEIIDHHGWRNFCSSAPWIQPEVVRDFYNERIDEEEDVVVVDETKVPFNAREINTIYELRDNPDAEGNKIIESTPTKLMEDTIRVMAKPGAKW
DVSPTGIKTPASSLRPEANLWVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAVQIRGVFSKPRGQLFFPTLIMNLYGNASIGGPTEVLDAEKMIEVNGVI
AHKTLRRLMRGSQYLPEPTKATKRPHQPVPPPKPQPQRRGSRPS