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Clc04G02760 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02760
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationClcChr04:8462817..8468349
RNA-Seq ExpressionClc04G02760
SyntenyClc04G02760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045307.1 uncharacterized protein E6C27_scaffold316G00720 [Cucumis melo var. makuwa]4.2e-0844.04Show/hide
Query:  GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTERVYRDCELV--IDNVVLLADLLPVELVEFDVILVEKLKPEDVPIAREYLDVFPKEL
        GHFKRDCPQLR     +Q   SQTV Q +      E T     ER+     L+  +     L       L     +  EKLKPEDVPI  E+LDVFP +L
Subjt:  GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTERVYRDCELV--IDNVVLLADLLPVELVEFDVILVEKLKPEDVPIAREYLDVFPKEL

Query:  SRMPPDREV
        S +PPDREV
Subjt:  SRMPPDREV

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-0930.47Show/hide
Query:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPD-----------------------------------VVTERVYRDC
        QCLV     Y   Q GHFKRDCPQLR+G   +Q   S TV QP+   +  E T                                     ++   V RDC
Subjt:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPD-----------------------------------VVTERVYRDC

Query:  ELVIDNVVLLADLLPVELVEFDVIL-------------------------------------------------------------------VEKLKPED
        E+V++ + +L DLLP+EL  FDVIL                                                                    EKLKP+D
Subjt:  ELVIDNVVLLADLLPVELVEFDVIL-------------------------------------------------------------------VEKLKPED

Query:  VPIAREYLDVFPKELSRMPPDREVELS---LPG
        VPI  EYLDVFP +L  +PPDREVE +   LPG
Subjt:  VPIAREYLDVFPKELSRMPPDREVELS---LPG

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-0448.28Show/hide
Query:  MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRG
        M  ++D+C+ F  GL  EIR PVT+   W +F+QLIE ALR E++I  EK   E +RG
Subjt:  MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRG

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-0836.47Show/hide
Query:  QCLVTQISAYS-SRQGHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTERVYRDCELVID-NVVLLADLLPVE-----LVEFDVILVEKL
        QCLV     Y   +QGHFK+DCPQL +    +Q   SQTV Q K+    V   P  V E V+R    V+  +++L A+ L  +     L    V+  EKL
Subjt:  QCLVTQISAYS-SRQGHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTERVYRDCELVID-NVVLLADLLPVE-----LVEFDVILVEKL

Query:  KPEDVPIAREYLDVFPKELSRMPPDREVELSLPGAFLKRLCVQKSKGSGWKKEPFKVILKSFGRLGDEPT
        K EDVP+ +E+LDV+  +LS +PPDRE+E      F+  L ++ +  S   +EP+++    F  L  + T
Subjt:  KPEDVPIAREYLDVFPKELSRMPPDREVELSLPGAFLKRLCVQKSKGSGWKKEPFKVILKSFGRLGDEPT

KAA0060440.1 retrotransposon protein [Cucumis melo var. makuwa]9.4e-0827.73Show/hide
Query:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQ----------------------PKQE-------TSEVEETPDVVT-------------
        QCLV     Y   Q GHFK+DCPQL +    +Q   SQTV Q                      P+Q+         E E+ PDV+T             
Subjt:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQ----------------------PKQE-------TSEVEETPDVVT-------------

Query:  -----------------------------------------ERVYRDCELVIDNVVLLADLLPVELVEFDVIL---------------------------
                                                   V R+CE++++ + LL DLLP+EL   DVIL                           
Subjt:  -----------------------------------------ERVYRDCELVIDNVVLLADLLPVELVEFDVIL---------------------------

Query:  ---------------VEKLKPEDVPIAREYLDVFPKELSRMPPDREVELS---LPG
                        EKLKPEDVP+ +E+LDVFP +LS +PPDRE+E +   LPG
Subjt:  ---------------VEKLKPEDVPIAREYLDVFPKELSRMPPDREVELS---LPG

KAA0060440.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-0446.55Show/hide
Query:  MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRG
        +  ++D+C+ F  GL+ EIR PVT+   W NF+QL+E ALR E++I  EK   E +RG
Subjt:  MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRG

WP_217833271.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]5.7e-2174.07Show/hide
Query:  FQLCFQHQRKSNFVQNPQEHLPQSSSEVCMKYGIDLSSRNVLKMIKHLINP----ADLASTNTRTYVADLPFTRRLAQGSY
        FQL  QHQ +SN VQNPQEHLPQSSSEV +KYG DLSSRNVLKMIKHLINP     DLA TNT+  +ADLP TRRLA+GS+
Subjt:  FQLCFQHQRKSNFVQNPQEHLPQSSSEVCMKYGIDLSSRNVLKMIKHLINP----ADLASTNTRTYVADLPFTRRLAQGSY

TrEMBL top hitse value%identityAlignment
A0A5A7TTZ7 CCHC-type domain-containing protein2.0e-0844.04Show/hide
Query:  GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTERVYRDCELV--IDNVVLLADLLPVELVEFDVILVEKLKPEDVPIAREYLDVFPKEL
        GHFKRDCPQLR     +Q   SQTV Q +      E T     ER+     L+  +     L       L     +  EKLKPEDVPI  E+LDVFP +L
Subjt:  GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTERVYRDCELV--IDNVVLLADLLPVELVEFDVILVEKLKPEDVPIAREYLDVFPKEL

Query:  SRMPPDREV
        S +PPDREV
Subjt:  SRMPPDREV

A0A5A7U9X4 DNA/RNA polymerases superfamily protein4.9e-1030.47Show/hide
Query:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPD-----------------------------------VVTERVYRDC
        QCLV     Y   Q GHFKRDCPQLR+G   +Q   S TV QP+   +  E T                                     ++   V RDC
Subjt:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPD-----------------------------------VVTERVYRDC

Query:  ELVIDNVVLLADLLPVELVEFDVIL-------------------------------------------------------------------VEKLKPED
        E+V++ + +L DLLP+EL  FDVIL                                                                    EKLKP+D
Subjt:  ELVIDNVVLLADLLPVELVEFDVIL-------------------------------------------------------------------VEKLKPED

Query:  VPIAREYLDVFPKELSRMPPDREVELS---LPG
        VPI  EYLDVFP +L  +PPDREVE +   LPG
Subjt:  VPIAREYLDVFPKELSRMPPDREVELS---LPG

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.3e-0448.28Show/hide
Query:  MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRG
        M  ++D+C+ F  GL  EIR PVT+   W +F+QLIE ALR E++I  EK   E +RG
Subjt:  MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRG

A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.0e-0936.47Show/hide
Query:  QCLVTQISAYS-SRQGHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTERVYRDCELVID-NVVLLADLLPVE-----LVEFDVILVEKL
        QCLV     Y   +QGHFK+DCPQL +    +Q   SQTV Q K+    V   P  V E V+R    V+  +++L A+ L  +     L    V+  EKL
Subjt:  QCLVTQISAYS-SRQGHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTERVYRDCELVID-NVVLLADLLPVE-----LVEFDVILVEKL

Query:  KPEDVPIAREYLDVFPKELSRMPPDREVELSLPGAFLKRLCVQKSKGSGWKKEPFKVILKSFGRLGDEPT
        K EDVP+ +E+LDV+  +LS +PPDRE+E      F+  L ++ +  S   +EP+++    F  L  + T
Subjt:  KPEDVPIAREYLDVFPKELSRMPPDREVELSLPGAFLKRLCVQKSKGSGWKKEPFKVILKSFGRLGDEPT

A0A5A7UZA9 Retrotransposon protein4.6e-0827.73Show/hide
Query:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQ----------------------PKQE-------TSEVEETPDVVT-------------
        QCLV     Y   Q GHFK+DCPQL +    +Q   SQTV Q                      P+Q+         E E+ PDV+T             
Subjt:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQ----------------------PKQE-------TSEVEETPDVVT-------------

Query:  -----------------------------------------ERVYRDCELVIDNVVLLADLLPVELVEFDVIL---------------------------
                                                   V R+CE++++ + LL DLLP+EL   DVIL                           
Subjt:  -----------------------------------------ERVYRDCELVIDNVVLLADLLPVELVEFDVIL---------------------------

Query:  ---------------VEKLKPEDVPIAREYLDVFPKELSRMPPDREVELS---LPG
                        EKLKPEDVP+ +E+LDVFP +LS +PPDRE+E +   LPG
Subjt:  ---------------VEKLKPEDVPIAREYLDVFPKELSRMPPDREVELS---LPG

A0A5A7UZA9 Retrotransposon protein2.3e-0446.55Show/hide
Query:  MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRG
        +  ++D+C+ F  GL+ EIR PVT+   W NF+QL+E ALR E++I  EK   E +RG
Subjt:  MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRG

A0A5A7UZA9 Retrotransposon protein1.7e-0728.44Show/hide
Query:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPD--------------------VVTERVYRDCELVIDNVVLLADLLP
        QCLV     Y   Q GHFK+DCPQ  +    +    SQTV Q +      E T                      ++   V R CE++++ + LL DLLP
Subjt:  QCLVTQISAYSSRQ-GHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPD--------------------VVTERVYRDCELVIDNVVLLADLLP

Query:  VELVEFDVIL-------------------------------------------------------------------VEKLKPEDVPIAREYLDVFPKEL
        +EL   DVIL                                                                    EKLKPEDVP+ +E+LDVFP +L
Subjt:  VELVEFDVIL-------------------------------------------------------------------VEKLKPEDVPIAREYLDVFPKEL

Query:  SRMPPDREVELS---LPG
          +PPDRE+E +   LPG
Subjt:  SRMPPDREVELS---LPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATAAAGCTGATAAGTGCAAGTGTTTTGCGGAAGGTTTGCAAGCTGAAATTCGTCCACCAGTTACGTCTAGTGTGGTATGGATGAATTTTGCACAATTGATTGA
AGCTGCATTAAGGGCTGAAAGAAATATAGCAGCTGAGAAAGTTAAAAGGGAAAACAATAGGGGAAGATTTAGAGAGGACAAGCCTAGGGTACGTCTAGGGAATAGTCTCA
TCAAGGTGAGAGTAGACGTTGAGGCGGAGCAACGCTTCTACGCACTCAATGTCGAAAATCACCTTAGTTGGGGTGGAGCAAGGCTCAACACTCCCAACGTCGAATTCGTC
CCTGGCTCAATGCGGAGCAACTCGATGCACCAGCCAAATCAACCTCTATGTGCACATAGGAATATGACGGGTTGCCCAAGTACCTTCTCATGTCCTTCAGTACTGGGTCC
CGGGGAAACTCACCGTTATCTAGCGAGATCTGTGAGACGGAAGACTCTTTTGCGTCTCAGCGACACCCGTCTCGCTATCAGTACCCAGACAGTGTGCCGATACTTGATTT
TTAGCGGCAGTCTGCATCGTTATTCCTTCCTTTCTTCTTGTTCTTACTTTGATCTATTAAAAGTCACAATTCCATACGGATTCAGGACTTCTTTTCTTCTACAAACTTAT
AGAAAATTAAGTTCTATAGCTTACCTCAAAGTTTCAAGGCTTAACTCCTCCTCGCTCTCACGATATTTCGGAATCACCTCCTGCTGTTCCGGATTGCGTAATAATCTTGT
AAACTCTGCTTTTCCTAAAGATTCACATACTCTAAACTTGGCTTCTTCCTCACGTTCTACTCTGATTATCAGTCACTGCTCAAACTGTGTGACTTCAGTCATTCCTCTGT
TCCAGCTTTGTTTTCAACATCAACGTAAGTCAAATTTCGTCCAAAATCCGCAAGAACACCTTCCTCAATCTTCTTCTGAAGTTTGTATGAAATATGGAATCGACTTAAGC
TCTCGTAATGTCTTAAAAATGATTAAACATTTAATTAATCCAGCTGACTTAGCCTCTACAAACACTAGGACTTATGTTGCCGACTTACCCTTCACCCGCAGACTAGCGCA
GGGTTCTTATCTCAGCGCGAGCCACAAACGCATGGCCGCACCACAATGCTTGGTAACGCAAATCAGTGCTTACAGTTCTAGGCAAGGACATTTCAAGAGGGATTGTCCTC
AGTTAAGATTGGGCAATGGAATGGAGCAAACAACTATGTCCCAGACGGTGAACCAGCCAAAGCAAGAAACAAGTGAGGTTGAGGAGACTCCAGATGTGGTGACCGAGCGT
GTCTATCGTGATTGCGAATTGGTAATTGATAACGTAGTTTTGCTAGCTGATCTTTTACCTGTAGAATTGGTAGAATTTGATGTTATTCTAGTGGAGAAGCTAAAACCCGA
AGATGTGCCAATAGCACGAGAGTATTTGGACGTGTTTCCCAAAGAGTTGTCAAGAATGCCACCTGATAGAGAGGTGGAATTGAGCCTACCGGGTGCATTTTTGAAGAGGC
TGTGCGTGCAGAAAAGCAAAGGCAGTGGCTGGAAGAAAGAACCCTTTAAGGTTATTTTGAAAAGTTTTGGACGCCTAGGAGACGAGCCGACATGCCATTGGCAACGCAAG
GGTGAGCGAGAGGCGTTGCTATCCGTGTGCAGACTGTGGAGGCAAGACGGGTCTCGCTGGTGGTGTTGCATGCGTGCAAAAGTTGAGCGAGACGAGTCTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATAAAGCTGATAAGTGCAAGTGTTTTGCGGAAGGTTTGCAAGCTGAAATTCGTCCACCAGTTACGTCTAGTGTGGTATGGATGAATTTTGCACAATTGATTGA
AGCTGCATTAAGGGCTGAAAGAAATATAGCAGCTGAGAAAGTTAAAAGGGAAAACAATAGGGGAAGATTTAGAGAGGACAAGCCTAGGGTACGTCTAGGGAATAGTCTCA
TCAAGGTGAGAGTAGACGTTGAGGCGGAGCAACGCTTCTACGCACTCAATGTCGAAAATCACCTTAGTTGGGGTGGAGCAAGGCTCAACACTCCCAACGTCGAATTCGTC
CCTGGCTCAATGCGGAGCAACTCGATGCACCAGCCAAATCAACCTCTATGTGCACATAGGAATATGACGGGTTGCCCAAGTACCTTCTCATGTCCTTCAGTACTGGGTCC
CGGGGAAACTCACCGTTATCTAGCGAGATCTGTGAGACGGAAGACTCTTTTGCGTCTCAGCGACACCCGTCTCGCTATCAGTACCCAGACAGTGTGCCGATACTTGATTT
TTAGCGGCAGTCTGCATCGTTATTCCTTCCTTTCTTCTTGTTCTTACTTTGATCTATTAAAAGTCACAATTCCATACGGATTCAGGACTTCTTTTCTTCTACAAACTTAT
AGAAAATTAAGTTCTATAGCTTACCTCAAAGTTTCAAGGCTTAACTCCTCCTCGCTCTCACGATATTTCGGAATCACCTCCTGCTGTTCCGGATTGCGTAATAATCTTGT
AAACTCTGCTTTTCCTAAAGATTCACATACTCTAAACTTGGCTTCTTCCTCACGTTCTACTCTGATTATCAGTCACTGCTCAAACTGTGTGACTTCAGTCATTCCTCTGT
TCCAGCTTTGTTTTCAACATCAACGTAAGTCAAATTTCGTCCAAAATCCGCAAGAACACCTTCCTCAATCTTCTTCTGAAGTTTGTATGAAATATGGAATCGACTTAAGC
TCTCGTAATGTCTTAAAAATGATTAAACATTTAATTAATCCAGCTGACTTAGCCTCTACAAACACTAGGACTTATGTTGCCGACTTACCCTTCACCCGCAGACTAGCGCA
GGGTTCTTATCTCAGCGCGAGCCACAAACGCATGGCCGCACCACAATGCTTGGTAACGCAAATCAGTGCTTACAGTTCTAGGCAAGGACATTTCAAGAGGGATTGTCCTC
AGTTAAGATTGGGCAATGGAATGGAGCAAACAACTATGTCCCAGACGGTGAACCAGCCAAAGCAAGAAACAAGTGAGGTTGAGGAGACTCCAGATGTGGTGACCGAGCGT
GTCTATCGTGATTGCGAATTGGTAATTGATAACGTAGTTTTGCTAGCTGATCTTTTACCTGTAGAATTGGTAGAATTTGATGTTATTCTAGTGGAGAAGCTAAAACCCGA
AGATGTGCCAATAGCACGAGAGTATTTGGACGTGTTTCCCAAAGAGTTGTCAAGAATGCCACCTGATAGAGAGGTGGAATTGAGCCTACCGGGTGCATTTTTGAAGAGGC
TGTGCGTGCAGAAAAGCAAAGGCAGTGGCTGGAAGAAAGAACCCTTTAAGGTTATTTTGAAAAGTTTTGGACGCCTAGGAGACGAGCCGACATGCCATTGGCAACGCAAG
GGTGAGCGAGAGGCGTTGCTATCCGTGTGCAGACTGTGGAGGCAAGACGGGTCTCGCTGGTGGTGTTGCATGCGTGCAAAAGTTGAGCGAGACGAGTCTTGCTAG
Protein sequenceShow/hide protein sequence
MEDKADKCKCFAEGLQAEIRPPVTSSVVWMNFAQLIEAALRAERNIAAEKVKRENNRGRFREDKPRVRLGNSLIKVRVDVEAEQRFYALNVENHLSWGGARLNTPNVEFV
PGSMRSNSMHQPNQPLCAHRNMTGCPSTFSCPSVLGPGETHRYLARSVRRKTLLRLSDTRLAISTQTVCRYLIFSGSLHRYSFLSSCSYFDLLKVTIPYGFRTSFLLQTY
RKLSSIAYLKVSRLNSSSLSRYFGITSCCSGLRNNLVNSAFPKDSHTLNLASSSRSTLIISHCSNCVTSVIPLFQLCFQHQRKSNFVQNPQEHLPQSSSEVCMKYGIDLS
SRNVLKMIKHLINPADLASTNTRTYVADLPFTRRLAQGSYLSASHKRMAAPQCLVTQISAYSSRQGHFKRDCPQLRLGNGMEQTTMSQTVNQPKQETSEVEETPDVVTER
VYRDCELVIDNVVLLADLLPVELVEFDVILVEKLKPEDVPIAREYLDVFPKELSRMPPDREVELSLPGAFLKRLCVQKSKGSGWKKEPFKVILKSFGRLGDEPTCHWQRK
GEREALLSVCRLWRQDGSRWWCCMRAKVERDESC