CuGenDBv2

Gene ID	Clc04G02800
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Genome location	ClcChr04:8481405..8483286
RNA-Seq Expression	Clc04G02800
Synteny	Clc04G02800
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR016197 - Chromo-like domain superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

8.2e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

8.2e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

8.2e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]

8.2e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]

8.2e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2V7 Reverse transcriptase

4.0e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

A0A5A7UNA3 Reverse transcriptase

4.0e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

A0A5A7UUL6 Reverse transcriptase

4.0e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

A0A5D3BHI1 Reverse transcriptase

4.0e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

A0A5D3BS67 Reverse transcriptase

4.0e-185

79.27

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        MK+EIAE V +CL+CQQVKP RQRPGG L PLP+PEWKWEH+TMDFLFGLPRT  G+DGIWVIVDRLTKT +F+P+K TSTLDQLA+LY+D+++SQYG P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
        +SIV DRDPRFTSKFWPSLQ A+GT LKFST+FHPQTDGQSERTIQTLEDMLRACVLQ KGSWDTHL LMEFAYNNNY SSIGMAPYEALYGR CRTPVC
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE
        W EVGERKL+GPELVQ T+ N+KLIRE L+ AQDRQK+YADKR R+LEF++GD+VFLKLSPW+G+ RF RKGKLSPRYIGPY+I ER+GP AYRL LP E
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTE

Query:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK
        L+++HDVFHVS+LRKYIPDP+HVL+ QP+++ EDL+Y EEPVQILDRKEQVLR KTIPL+KVLWR+H  EEATWE E QMK
Subjt:  LSKVHDVFHVSLLRKYIPDPTHVLETQPIQVNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.2e-48

34.59

Show/hide

Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        ++++I E V  C  CQ  K    +P G L+P+P  E  WE ++MDF+  LP +  GY+ ++V+VDR +K A  +P   + T +Q A+++  RVI+ +G P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
          I+ D D  FTS+ W    H     +KFS  + PQTDGQ+ERT QT+E +LR        +W  H+SL++ +YNN  HS+  M P+E ++  R    + 
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT
          E+        E  Q T +  + ++E L T   + K Y D + +++ EF+ GD V +K +         +  KL+P + GP+ +L++ GP  Y L LP 
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT

Query:  ELSKV-HDVFHVSLLRKY
         +  +    FHVS L KY
Subjt:  ELSKV-HDVFHVSLLRKY

P0CT35 Transposon Tf2-2 polyprotein

1.2e-48

34.59

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Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        ++++I E V  C  CQ  K    +P G L+P+P  E  WE ++MDF+  LP +  GY+ ++V+VDR +K A  +P   + T +Q A+++  RVI+ +G P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
          I+ D D  FTS+ W    H     +KFS  + PQTDGQ+ERT QT+E +LR        +W  H+SL++ +YNN  HS+  M P+E ++  R    + 
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT
          E+        E  Q T +  + ++E L T   + K Y D + +++ EF+ GD V +K +         +  KL+P + GP+ +L++ GP  Y L LP 
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT

Query:  ELSKV-HDVFHVSLLRKY
         +  +    FHVS L KY
Subjt:  ELSKV-HDVFHVSLLRKY

P0CT36 Transposon Tf2-3 polyprotein

1.2e-48

34.59

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Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        ++++I E V  C  CQ  K    +P G L+P+P  E  WE ++MDF+  LP +  GY+ ++V+VDR +K A  +P   + T +Q A+++  RVI+ +G P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
          I+ D D  FTS+ W    H     +KFS  + PQTDGQ+ERT QT+E +LR        +W  H+SL++ +YNN  HS+  M P+E ++  R    + 
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT
          E+        E  Q T +  + ++E L T   + K Y D + +++ EF+ GD V +K +         +  KL+P + GP+ +L++ GP  Y L LP 
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT

Query:  ELSKV-HDVFHVSLLRKY
         +  +    FHVS L KY
Subjt:  ELSKV-HDVFHVSLLRKY

P0CT41 Transposon Tf2-12 polyprotein

1.2e-48

34.59

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Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        ++++I E V  C  CQ  K    +P G L+P+P  E  WE ++MDF+  LP +  GY+ ++V+VDR +K A  +P   + T +Q A+++  RVI+ +G P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
          I+ D D  FTS+ W    H     +KFS  + PQTDGQ+ERT QT+E +LR        +W  H+SL++ +YNN  HS+  M P+E ++  R    + 
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT
          E+        E  Q T +  + ++E L T   + K Y D + +++ EF+ GD V +K +         +  KL+P + GP+ +L++ GP  Y L LP 
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT

Query:  ELSKV-HDVFHVSLLRKY
         +  +    FHVS L KY
Subjt:  ELSKV-HDVFHVSLLRKY

Q9UR07 Transposon Tf2-11 polyprotein

1.2e-48

34.59

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Query:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP
        ++++I E V  C  CQ  K    +P G L+P+P  E  WE ++MDF+  LP +  GY+ ++V+VDR +K A  +P   + T +Q A+++  RVI+ +G P
Subjt:  MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAP

Query:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC
          I+ D D  FTS+ W    H     +KFS  + PQTDGQ+ERT QT+E +LR        +W  H+SL++ +YNN  HS+  M P+E ++  R    + 
Subjt:  ISIVFDRDPRFTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVC

Query:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT
          E+        E  Q T +  + ++E L T   + K Y D + +++ EF+ GD V +K +         +  KL+P + GP+ +L++ GP  Y L LP 
Subjt:  WGEVGERKLIGPELVQATSENVKLIREKLKTAQDRQKNYADKRCRDL-EFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPT

Query:  ELSKV-HDVFHVSLLRKY
         +  +    FHVS L KY
Subjt:  ELSKV-HDVFHVSLLRKY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAACGAGAAATTGCAGAATGTGTGGCAAAATGCTTGGTATGTCAACAAGTTAAACCGGAGAGACAACGACCCGGTGGACTCTTGAGACCACTTCCAATACCTGAATG
GAAATGGGAACACGTTACAATGGATTTCTTATTCGGACTTCCTAGAACCCCTGGAGGTTATGATGGAATTTGGGTGATAGTTGATAGACTTACTAAAACTGCCAAATTTC
TTCCAGTTAAAGCAACTTCAACCTTGGATCAGTTGGCTAAATTGTATATTGATAGAGTAATAAGTCAATATGGAGCACCGATATCGATTGTTTTTGACAGAGATCCAAGG
TTTACGTCTAAATTTTGGCCCAGTTTGCAGCATGCGTTAGGAACTAAACTGAAGTTTAGCACAGCCTTCCATCCTCAAACGGATGGGCAATCAGAACGGACAATACAGAC
CTTAGAAGATATGTTGCGTGCATGCGTGTTGCAATTCAAAGGGAGCTGGGATACTCACCTATCTTTAATGGAGTTCGCCTATAACAATAATTATCATTCCAGTATTGGGA
TGGCACCTTACGAGGCGTTATATGGTAGACGTTGTAGAACTCCTGTATGCTGGGGTGAGGTAGGTGAACGCAAGTTAATAGGGCCAGAATTAGTTCAAGCCACTTCTGAA
AATGTGAAACTTATAAGAGAGAAATTAAAAACCGCACAGGATCGACAAAAGAACTATGCGGACAAAAGGTGTCGAGACTTAGAATTTGAAATTGGGGATAGAGTCTTCCT
AAAATTATCTCCTTGGAAGGGAATATCGAGATTTAGAAGGAAAGGAAAACTAAGTCCAAGATACATTGGACCGTATGAGATTTTGGAACGCATAGGGCCTTTAGCTTATC
GTTTAGCATTGCCCACGGAATTGTCCAAAGTACACGATGTGTTCCATGTCTCTCTATTGAGGAAGTATATTCCCGATCCTACACATGTTTTAGAAACGCAACCTATTCAA
GTGAATGAAGACTTAAACTATGAAGAAGAGCCTGTGCAAATTCTTGACCGCAAAGAGCAAGTGTTAAGAACAAAAACAATACCACTCGTGAAGGTATTGTGGAGAAACCA
TCAAGTCGAAGAAGCAACATGGGAAAGTGAAGAACAAATGAAAATCAAAATTGAGGCACGACCATGCGTTTGTGGCTATGCGTCTCAAAGGGAGAAGTGGCCGAGAGCAA
GAAGAGGAGAACCCTGCGATAGTCTGCAGAGGAAATACGTAAGTAGCAGCCTAAGTCCTGGTGTTGATAAGAAGAAGATTAAGGAGGGTGTTCTTGAGGATTCCGGACGA
AGTTTGATTCACATCGAAGCTGGAAACAAAGATGGAACAGGGGAATGA

mRNA sequence

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Protein sequence

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MKREIAECVAKCLVCQQVKPERQRPGGLLRPLPIPEWKWEHVTMDFLFGLPRTPGGYDGIWVIVDRLTKTAKFLPVKATSTLDQLAKLYIDRVISQYGAPISIVFDRDPR
FTSKFWPSLQHALGTKLKFSTAFHPQTDGQSERTIQTLEDMLRACVLQFKGSWDTHLSLMEFAYNNNYHSSIGMAPYEALYGRRCRTPVCWGEVGERKLIGPELVQATSE
NVKLIREKLKTAQDRQKNYADKRCRDLEFEIGDRVFLKLSPWKGISRFRRKGKLSPRYIGPYEILERIGPLAYRLALPTELSKVHDVFHVSLLRKYIPDPTHVLETQPIQ
VNEDLNYEEEPVQILDRKEQVLRTKTIPLVKVLWRNHQVEEATWESEEQMKIKIEARPCVCGYASQREKWPRARRGEPCDSLQRKYVSSSLSPGVDKKKIKEGVLEDSGR
SLIHIEAGNKDGTGE

Clc04G02800 (gene) of Watermelon (cordophanus) v2 genome