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Clc04G02880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G02880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC110412945
Genome locationClcChr04:8544167..8547851
RNA-Seq ExpressionClc04G02880
SyntenyClc04G02880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]3.5e-7464.64Show/hide
Query:  TVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMANQQ-EP
        T S+ + ++  ++ S KNAQEAYTILEDLATTSYNWPCER+SP IPKA G YE+DEV+SLKAQ+ASL NALSK + G Q Q +PPSIASLAA+A++    
Subjt:  TVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMANQQ-EP

Query:  SELEVANYVDRGQYRG--QQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSRTTTLENSV-----------KLFQA
         + E ANYVDRG YR    QQL T YHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTS LEDIMLDFVKESRSRTTTLENSV           K  Q 
Subjt:  SELEVANYVDRGQYRG--QQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSRTTTLENSV-----------KLFQA

Query:  L------------------FKNCPKRNPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAI
        L                  F +CP+ NP+EECK VTLR+GKKLSTPLI DED+E  QE D+ I
Subjt:  L------------------FKNCPKRNPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAI

XP_022883666.1 uncharacterized protein LOC111400483 [Olea europaea var. sylvestris]1.4e-2233.21Show/hide
Query:  GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINAL-SKFSQGSQ--VQASPPSIASLAA
        G NG T  + + ++   L + K A+ AY +L+D+AT SY WP ERS   + K  G +E+D +++L AQ+ASL N + +  +QG+Q  V  S  S      
Subjt:  GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINAL-SKFSQGSQ--VQASPPSIASLAA

Query:  MANQQEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESR-------SRTTTLENSVKLFQ
        +AN+Q    +   NY  RG Y+     +  YHP L+NHEN SY NN+N LQ P GFN   +     LEDI+  F+ E+R       SR   +E       
Subjt:  MANQQEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESR-------SRTTTLENSVKLFQ

Query:  ALFKNCPKR----------------------NPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAIIED
        A  KN   +                       PKE CK + LR+GK++      ++ +  P +E E ++E+
Subjt:  ALFKNCPKR----------------------NPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAIIED

XP_022883717.1 uncharacterized protein LOC111400543 [Olea europaea var. sylvestris]1.1e-2233.77Show/hide
Query:  SEFGILCLRNNLVWV---IF--GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSK
        S F +L   N   WV   IF  G N  T ++ +      L + K  +  Y +L+D+AT SY WP ERS   + K  G +E+D + +L AQ+ASL N +  
Subjt:  SEFGILCLRNNLVWV---IF--GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSK

Query:  FSQGSQVQASPPSIASLAAMANQQEPSELEVANYVDRGQY--RGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESR
         +  +Q Q    S+ S ++   + E +  E A YV+   Y  RG  Q +  YHP LRNHEN SY NN+N LQ P GFN   +     LEDI+  F+ E+R
Subjt:  FSQGSQVQASPPSIASLAAMANQQEPSELEVANYVDRGQY--RGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESR

Query:  SRTT-------TLENSVKLFQALFKNCPKR----------------------NPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAIIED-VPQKKGA
        SR          +E  V    A  KN   +                      NPKE CK V LR+GK++      ++ +  P +E E ++E+   Q KG 
Subjt:  SRTT-------TLENSVKLFQALFKNCPKR----------------------NPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAIIED-VPQKKGA

Query:  SK
        +K
Subjt:  SK

XP_022893883.1 uncharacterized protein LOC111408348 [Olea europaea var. sylvestris]4.0e-2535.19Show/hide
Query:  ESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINAL-SKFSQGSQVQASPPSIASLAAMANQQEPSELEVA
        +++A  +   K A+  Y +L+D+AT SY WP ERS   + K  G +E+D +++L AQ+ASL N + +  +QG+Q +    SI S ++   + E +  E A
Subjt:  ESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINAL-SKFSQGSQVQASPPSIASLAAMANQQEPSELEVA

Query:  NYVDRGQY--RGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESR-------SRTTTLENSVKLFQALFKNCPKR--
         YV+   Y  RG  Q +  YHP LRNHEN SY NN+N LQ P GFN   +     LEDI+  F+ E+R       SR   +E  V    A  KN   +  
Subjt:  NYVDRGQY--RGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESR-------SRTTTLENSVKLFQALFKNCPKR--

Query:  --------------------NPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAII-EDVPQKKGASK
                            NPKE CK V LRNGK++    + ++ +  P +E E ++ E   Q KG +K
Subjt:  --------------------NPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAII-EDVPQKKGASK

XP_024020480.1 uncharacterized protein LOC112091333 [Morus notabilis]5.7e-2432.57Show/hide
Query:  GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMAN
        G NG + ++ + +++ +L + K+  EAY +LE+++T SY WP ERS P   K  G +E+D ++SL AQ+++L N ++  +   +  +S  ++A  + +  
Subjt:  GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMAN

Query:  QQEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSRTT--------------------
        Q E ++ +V    +R       QL   YHP LRNHENFSYANN+NVLQ P GFN     K   +ED++  F+ E+R R                      
Subjt:  QQEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSRTT--------------------

Query:  --------TLENSVK-LFQALFKNCPKRNPKEECKVVTLRNGKKLSTPLINDEDDELPQEE
                 L N+VK      F +  + NP + CK +TLR+GK++  P    ++D++ +EE
Subjt:  --------TLENSVK-LFQALFKNCPKRNPKEECKVVTLRNGKKLSTPLINDEDDELPQEE

TrEMBL top hitse value%identityAlignment
A0A2I4FP56 uncharacterized protein LOC1090008372.4e-1529.32Show/hide
Query:  NGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSK-FSQGSQVQASPPSIASLAAMANQ
        NG T +  + +S   L S K A+    +LE++A+++Y WP +R+     K  G +E++ ++++ AQ+A+L + +S   +Q     A   +  S+   +N+
Subjt:  NGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSK-FSQGSQVQASPPSIASLAAMANQ

Query:  QEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVL--QAPQGFNGAGNAKTSLLEDIMLDFV-------KESRSRTTTLENSVKLFQAL
            +++  N      YRG   +   +HP LRNHEN SY N KNVL  Q P GFN   + K   LE+ M+ FV       KE+ S+   +E      +A 
Subjt:  QEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVL--QAPQGFNGAGNAKTSLLEDIMLDFV-------KESRSRTTTLENSVKLFQAL

Query:  FKNCPKR----------------------NPKEECKVVTLRNGKKLSTP
         KN   +                      NP E+ K +TLR+G+++  P
Subjt:  FKNCPKR----------------------NPKEECKVVTLRNGKKLSTP

A0A2I4G4Q3 uncharacterized protein LOC1090047126.9e-1529.07Show/hide
Query:  GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGR-YEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIA-SLAAM
        G NG T ++ +++S  TL   K  + A  +LE++A+ +Y WP ER+   + K + R +E++ +++L AQ+A+L + +S  +     Q++   +A S+  +
Subjt:  GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGR-YEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIA-SLAAM

Query:  ANQQEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVL--QAPQGFNGAGNAKTSLLEDIMLDFVKESR-------SRTTTLENSVKLF
        +N+    +++  N  +R        +   YHP  +NHEN SY N KNVL  Q P GF+   + K   LED M+ F++E+        SR   +E      
Subjt:  ANQQEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVL--QAPQGFNGAGNAKTSLLEDIMLDFVKESR-------SRTTTLENSVKLF

Query:  QALFK--------------NCPKR---------NPKEECKVVTLRNGKKLSTPLINDE
         A  K              N  +R         NP+E+CK + LR+G++L   L  +E
Subjt:  QALFK--------------NCPKR---------NPKEECKVVTLRNGKKLSTPLINDE

A0A2P5B1T0 Uncharacterized protein3.1e-1532.27Show/hide
Query:  LATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMANQQEPSELEVANYVDRG--QYRGQQQLS---TRY
        +A+ +Y WP E S  I+ +     E+D +++L AQ+++L + +S  +      +      S A+  N  +  +L   NY++     YRG   L+   T Y
Subjt:  LATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMANQQEPSELEVANYVDRG--QYRGQQQLS---TRY

Query:  HPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSRTTTLE----------------------------NSVK-LFQALFKNCPKR
        HP L NHENFSY NN+NVLQ P G N +   K   LEDI+  F+ E+R R    E                            NS+K      F N  + 
Subjt:  HPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSRTTTLE----------------------------NSVK-LFQALFKNCPKR

Query:  NPKEECKVVTLRNGKKLSTP
        NPK  CK +TLR+GK++  P
Subjt:  NPKEECKVVTLRNGKKLSTP

A0A2P5B7D3 Uncharacterized protein (Fragment)1.2e-1637.14Show/hide
Query:  LTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMANQQEPSELE
        + + ++  TL S K   EA   LE++A+ +Y WP ERS  I+ +     E+D ++ L AQ+++L + +S  +      +  P   S A+  N     +LE
Subjt:  LTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMANQQEPSELE

Query:  VANYVDRGQYRGQ-----QQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSR
          NY++   +  Q       L T YHP+LRNHENFSYANN+NVLQ P G N     K   LEDI+  F+ E+R R
Subjt:  VANYVDRGQYRGQ-----QQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSR

A0A6P9DWY0 uncharacterized protein LOC1183440266.0e-1932.02Show/hide
Query:  GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMAN
        G NG T ++ + +S  TL S K A+ A  +LE++A+ +Y WP ER+  +  K  G +E++ +++L AQ+ASL + +S  +   ++  S   +A+ +    
Subjt:  GENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMAN

Query:  QQEPSELEVANYVDRG-QYRGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESR-------SRTTTLENSVKLFQAL
          E S+ +V    +R   YRG   +   YH  LRNHEN SY N KNVLQ   GF+   + K   LED M+ FV+E+        SR   +E       A 
Subjt:  QQEPSELEVANYVDRG-QYRGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESR-------SRTTTLENSVKLFQAL

Query:  FKNCPKR----------------------NPKEECKVVTLRNGKKLSTPLIND
         KN   +                      NP+E+CK +TLR+G++L     N+
Subjt:  FKNCPKR----------------------NPKEECKVVTLRNGKKLSTPLIND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAAGAGGAGGCTCAGTGCTGATGGACTCGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGATGGACATGAGAAGGTACTCGGGCAACCCGCCATATTCCTA
TGTGCACATAGAGGTAGCGAGTGAGTTTGGGATACTTTGCCTACGCAATAACCTCGTCTGGGTCATCTTTGGTGAAAATGGTTGGACAGTGAGCCTTACAGAGGAGTCAA
GCGCCGCGACGCTAAAATCAGAGAAGAATGCTCAAGAGGCGTATACCATACTAGAAGACTTGGCCACTACATCGTACAATTGGCCTTGTGAACGGTCTTCTCCAATCATT
CCAAAAGCCATCGGAAGATATGAGATGGACGAGGTAAGTTCTCTAAAAGCTCAATTGGCTTCGCTCATTAATGCTTTATCTAAATTTTCTCAAGGAAGCCAAGTCCAAGC
AAGTCCACCATCAATAGCTTCTCTTGCGGCCATGGCAAATCAACAAGAGCCAAGTGAGTTGGAGGTAGCCAATTATGTGGATAGAGGACAATACCGAGGTCAACAACAAC
TTTCAACTCGCTATCATCCCAACTTGAGGAATCATGAGAATTTTTCATATGCTAACAACAAGAATGTTTTGCAAGCACCTCAAGGATTCAATGGAGCGGGAAATGCAAAG
ACATCATTACTAGAGGACATAATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCAAGCTATTTCAAGCACTGTTCAAAAATTGCCC
TAAGAGAAACCCGAAGGAGGAATGCAAGGTCGTGACTTTGAGGAATGGAAAAAAGCTATCCACTCCTTTGATCAATGATGAAGATGATGAGCTTCCACAAGAAGAGGATG
AAGCCATCATAGAGGATGTCCCACAAAAAAAGGGTGCATCTAAGGAAAAGGAGAAATCAAAGTCCAACATAGGGATATTGGCCATGCGTTGGTGGCACTATGCGTTGATG
AAAGTAGTTTGGCGTGGACGCAGAGGTGAAGGAAGGCCATTAGGCGTTGAAGGCCACGAGATGTTGAAGGCCACGAGGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAAGAGGAGGCTCAGTGCTGATGGACTCGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGATGGACATGAGAAGGTACTCGGGCAACCCGCCATATTCCTA
TGTGCACATAGAGGTAGCGAGTGAGTTTGGGATACTTTGCCTACGCAATAACCTCGTCTGGGTCATCTTTGGTGAAAATGGTTGGACAGTGAGCCTTACAGAGGAGTCAA
GCGCCGCGACGCTAAAATCAGAGAAGAATGCTCAAGAGGCGTATACCATACTAGAAGACTTGGCCACTACATCGTACAATTGGCCTTGTGAACGGTCTTCTCCAATCATT
CCAAAAGCCATCGGAAGATATGAGATGGACGAGGTAAGTTCTCTAAAAGCTCAATTGGCTTCGCTCATTAATGCTTTATCTAAATTTTCTCAAGGAAGCCAAGTCCAAGC
AAGTCCACCATCAATAGCTTCTCTTGCGGCCATGGCAAATCAACAAGAGCCAAGTGAGTTGGAGGTAGCCAATTATGTGGATAGAGGACAATACCGAGGTCAACAACAAC
TTTCAACTCGCTATCATCCCAACTTGAGGAATCATGAGAATTTTTCATATGCTAACAACAAGAATGTTTTGCAAGCACCTCAAGGATTCAATGGAGCGGGAAATGCAAAG
ACATCATTACTAGAGGACATAATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCAAGCTATTTCAAGCACTGTTCAAAAATTGCCC
TAAGAGAAACCCGAAGGAGGAATGCAAGGTCGTGACTTTGAGGAATGGAAAAAAGCTATCCACTCCTTTGATCAATGATGAAGATGATGAGCTTCCACAAGAAGAGGATG
AAGCCATCATAGAGGATGTCCCACAAAAAAAGGGTGCATCTAAGGAAAAGGAGAAATCAAAGTCCAACATAGGGATATTGGCCATGCGTTGGTGGCACTATGCGTTGATG
AAAGTAGTTTGGCGTGGACGCAGAGGTGAAGGAAGGCCATTAGGCGTTGAAGGCCACGAGATGTTGAAGGCCACGAGGCGTTGA
Protein sequenceShow/hide protein sequence
MFKRRLSADGLEKAREFPQDPVLMDMRRYSGNPPYSYVHIEVASEFGILCLRNNLVWVIFGENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPII
PKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMANQQEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAK
TSLLEDIMLDFVKESRSRTTTLENSVKLFQALFKNCPKRNPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAIIEDVPQKKGASKEKEKSKSNIGILAMRWWHYALM
KVVWRGRRGEGRPLGVEGHEMLKATRR