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Clc04G03000 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G03000
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box protein
Genome locationClcChr04:8653188..8653775
RNA-Seq ExpressionClc04G03000
SyntenyClc04G03000
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008437545.1 PREDICTED: F-box protein At5g52880 isoform X2 [Cucumis melo]2.7e-3789.47Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL
        MQTSSAASAA LLAQ VEAALPKQKRN+ IVE+KKAMV HKRRSKAHQEEKGS QLPQDVLLHIFRFLDV+SL SAGLVCRSWNVAA+DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL

XP_011654641.1 F-box protein At5g52880 isoform X2 [Cucumis sativus]2.7e-3788.42Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL
        MQTSSAASAA LLA+ VEAALPKQKRN+ IVEFKKAMV HKRR+KAHQEEKGS QLPQDVLLHIFRF+DV+SLVSAGLVCRSWNVAA DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL

XP_022157180.1 F-box protein At5g52880 [Momordica charantia]2.1e-3791.3Show/hide
Query:  SSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL
        SSA SAAHLLAQGVEAA PK+KRN+AIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLD+ SLVSAGLVCRSWNVAA+DE+LWQL
Subjt:  SSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL

XP_038874449.1 F-box protein At5g52880 isoform X1 [Benincasa hispida]1.8e-4196.84Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL
        MQTSSAASAAHLLAQGVEAALPKQKRN+AIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDV+SLVSAGLVCRSWNVAA+DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL

XP_038874450.1 F-box protein At5g52880 isoform X2 [Benincasa hispida]1.8e-4196.84Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL
        MQTSSAASAAHLLAQGVEAALPKQKRN+AIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDV+SLVSAGLVCRSWNVAA+DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL

TrEMBL top hitse value%identityAlignment
A0A0A0KNE5 F-box domain-containing protein1.3e-3788.42Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL
        MQTSSAASAA LLA+ VEAALPKQKRN+ IVEFKKAMV HKRR+KAHQEEKGS QLPQDVLLHIFRF+DV+SLVSAGLVCRSWNVAA DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL

A0A5A7TKV8 F-box protein1.3e-3789.47Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL
        MQTSSAASAA LLAQ VEAALPKQKRN+ IVE+KKAMV HKRRSKAHQEEKGS QLPQDVLLHIFRFLDV+SL SAGLVCRSWNVAA+DEYLWQL
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL

A0A6J1DSD8 F-box protein At5g528809.9e-3891.3Show/hide
Query:  SSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL
        SSA SAAHLLAQGVEAA PK+KRN+AIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLD+ SLVSAGLVCRSWNVAA+DE+LWQL
Subjt:  SSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL

A0A6J1E2E9 F-box protein At5g52880 isoform X11.3e-3789.36Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        MQTSSA SAAHLLAQGVEA+LPKQKRN+AIVEFKKAMVAHKRRSKA QE KGS+QLPQDVLLHIFRFLD+ SLVSAGLVCRSWN AA+DEYLWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ

A0A6J1E5S5 F-box protein At5g52880 isoform X21.3e-3789.36Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        MQTSSA SAAHLLAQGVEA+LPKQKRN+AIVEFKKAMVAHKRRSKA QE KGS+QLPQDVLLHIFRFLD+ SLVSAGLVCRSWN AA+DEYLWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ

SwissProt top hitse value%identityAlignment
A8XT88 F-box/SPRY domain-containing protein 15.3e-0438.98Show/hide
Query:  VAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWN--VAANDEYLWQ
        VA +RR    + E  +++LP  VL  IF++L ++ L SA L C SWN  ++  D  +WQ
Subjt:  VAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWN--VAANDEYLWQ

P34284 F-box/LRR-repeat protein fbxl-11.8e-0448.72Show/hide
Query:  LPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        LP++VLL +F FLD ++L  +  VCRSW++ A D   WQ
Subjt:  LPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ

Q4KLI9 F-box/WD repeat-containing protein 54.1e-0439.13Show/hide
Query:  EEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        +E G   LP  ++  IF  L    +++AGLVCR W   + DE+LW+
Subjt:  EEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ

Q969U6 F-box/WD repeat-containing protein 52.4e-0439.13Show/hide
Query:  EEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        +E G+  LP  ++  IF  L    +++AGLVCR W   + DE+LW+
Subjt:  EEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ

Q9FLX3 F-box protein At5g528803.7e-2158.95Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEK-GSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        + TS+A SAA+LL + VEA LPKQK+N AIVEFK+A VA KRRSK  +EE      LPQD+L+HIF FL++ SLVS+  V RSWN A ++  LWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEK-GSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ

Arabidopsis top hitse value%identityAlignment
AT5G45360.1 F-box family protein3.2e-0439.29Show/hide
Query:  HKRRSKAHQEEKG-SAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        +K ++ A + E G    +P ++  HI +FL    LVS  LVC+  N AA DE LW+
Subjt:  HKRRSKAHQEEKG-SAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ

AT5G48170.1 F-box family protein5.4e-0435.71Show/hide
Query:  AHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        ++ +R + +Q    S     DVL+ I R LD  SL SA  VCR W+  A ++ +W+
Subjt:  AHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ

AT5G52880.1 F-box family protein2.6e-2258.95Show/hide
Query:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEK-GSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ
        + TS+A SAA+LL + VEA LPKQK+N AIVEFK+A VA KRRSK  +EE      LPQD+L+HIF FL++ SLVS+  V RSWN A ++  LWQ
Subjt:  MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEK-GSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGCTTTGCCTAAGCAAAAGAGAAATGCAGCGATAGTAGAATTTAAGAAAGCAAT
GGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAACTCCCTCAAGACGTTCTCCTCCACATCTTCCGCTTTCTAGATGTTCGATCTTTAG
TTTCAGCTGGGCTAGTATGCCGGTCGTGGAATGTAGCAGCAAATGATGAATATTTGTGGCAGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGCTTTGCCTAAGCAAAAGAGAAATGCAGCGATAGTAGAATTTAAGAAAGCAAT
GGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAACTCCCTCAAGACGTTCTCCTCCACATCTTCCGCTTTCTAGATGTTCGATCTTTAG
TTTCAGCTGGGCTAGTATGCCGGTCGTGGAATGTAGCAGCAAATGATGAATATTTGTGGCAGTTGTAG
Protein sequenceShow/hide protein sequence
MQTSSAASAAHLLAQGVEAALPKQKRNAAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVRSLVSAGLVCRSWNVAANDEYLWQL