CuGenDBv2

Gene ID	Clc04G03280
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosome biogenesis protein
Genome location	ClcChr04:10378925..10381088
RNA-Seq Expression	Clc04G03280
Synteny	Clc04G03280
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

2.6e-69

90.51

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMG
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG

Query:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        TVLNHPVFQADP++A+QLHLEGTQP EEP+KKK NKNGS KRKEKK KASARPSSMEM
Subjt:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

6.0e-66

89.54

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Query:  SRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNH
        ++SD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMGTVLNH
Subjt:  SRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNH

Query:  PVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        PVFQADP++A+QLHLEGTQPIEEP+KKK NKNGS KRKEKKSKA ARPSSMEM
Subjt:  PVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]

3.1e-70

91.14

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMG
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG

Query:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        TVLNHPVFQADP++A+QLHLEGTQPIEEP+KKK NKNGS KRKEKKSKASA+PSSMEM
Subjt:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

XP_038883686.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida]

7.8e-66

87.97

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQKTI+KKK++RRRKR+LKAFDLS LSEFLPGL APKQKPSAA+ KLNCKSRLKF+LKER+QM 
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG

Query:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        TVLNHPVFQADP++AI+LHLEGTQPIEEP+KKKTNKNGS KRKEKKS ASARPSSMEM
Subjt:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]

2.3e-70

93.04

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQKTITKKK+HRRRKR+LKAFDLSTLSEFLPGLEAPKQKPSAA+LKLNCKSRLKFILKER+QMG
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG

Query:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        TVLNHPVFQADP++AIQLHLEGTQPIEEP KKKTNKNGS KRKEKKSKAS RPSSMEM
Subjt:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

1.5e-70

91.14

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMG
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG

Query:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        TVLNHPVFQADP++A+QLHLEGTQPIEEP+KKK NKNGS KRKEKKSKASA+PSSMEM
Subjt:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like

2.9e-66

89.54

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Query:  SRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNH
        ++SD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMGTVLNH
Subjt:  SRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNH

Query:  PVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        PVFQADP++A+QLHLEGTQPIEEP+KKK NKNGS KRKEKKSKA ARPSSMEM
Subjt:  PVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like

1.3e-69

90.51

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMG
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG

Query:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        TVLNHPVFQADP++A+QLHLEGTQP EEP+KKK NKNGS KRKEKK KASARPSSMEM
Subjt:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X2

1.4e-60

80.77

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG
        MGKPVSRSD KSKAERKF+KKVQFYERVGET+  LNAQKTI+K    R RK++LKAFDL+TLSEFLPGLEAPKQK SAA+LK+NCKSRLKFILKER+QMG
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG

Query:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSM
        TVLNHP FQADP+KAI LHLE TQP+EEP+KK TNKNGS KRKEKK KASA P  M
Subjt:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

1.8e-60

81.01

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG
        MGKP SRSD KSKAERKFEKK+QFYERVGETIATLNAQKTITKKK  RRRKR+LKAFDL+ LSEFLPGL+APKQK S  +LK+NCKSRLKF+LKE +QMG
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMG

Query:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        TVLNHP FQADP+ AI LHL+ TQP+EE +KKKTN+NGS KRKEKKSKA+A+PSSMEM
Subjt:  TVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

1.2e-32

51.63

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEA-PKQKPSAADLKLNCKSRLKFILKEREQM
        MGKP   S+  +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R+++LKA+DL+ LSEFLP   A  K    A +LK+NCK R K +L E E++
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEA-PKQKPSAADLKLNCKSRLKFILKEREQM

Query:  GTVLNHPVFQADPVKAIQLHLEGTQ-PIEEPRKKKTNKNGSTKRKEKKSKASA
          VL+HP FQADPV +I  HL   Q P+EE  KKKTN NGS KR +KK K  +
Subjt:  GTVLNHPVFQADPVKAIQLHLEGTQ-PIEEPRKKKTNKNGSTKRKEKKSKASA

AT2G01640.2 unknown protein

1.2e-32

51.63

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Query:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEA-PKQKPSAADLKLNCKSRLKFILKEREQM
        MGKP   S+  +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R+++LKA+DL+ LSEFLP   A  K    A +LK+NCK R K +L E E++
Subjt:  MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEA-PKQKPSAADLKLNCKSRLKFILKEREQM

Query:  GTVLNHPVFQADPVKAIQLHLEGTQ-PIEEPRKKKTNKNGSTKRKEKKSKASA
          VL+HP FQADPV +I  HL   Q P+EE  KKKTN NGS KR +KK K  +
Subjt:  GTVLNHPVFQADPVKAIQLHLEGTQ-PIEEPRKKKTNKNGSTKRKEKKSKASA

Sequences

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CDS sequence

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ATGGGCAAACCAGTCTCTCGGTCAGATCCAAAATCAAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTGAATGC
TCAAAAGACTATTACTAAGAAGAAAAACCATAGAAGACGTAAAAGGGAGTTGAAGGCTTTTGATCTTTCTACTCTGTCAGAGTTTCTTCCAGGATTGGAGGCCCCTAAAC
AAAAACCTTCTGCGGCTGATTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAGAGAGAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCA
GACCCAGTGAAAGCTATTCAACTACATTTAGAGGGCACACAACCAATTGAGGAACCAAGGAAAAAGAAGACGAACAAAAATGGGAGCACGAAAAGGAAAGAGAAGAAGTC
GAAAGCCTCTGCAAGGCCTTCATCTATGGAGATGTGA

mRNA sequence

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Protein sequence

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MGKPVSRSDPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQA
DPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

Clc04G03280 (gene) of Watermelon (cordophanus) v2 genome