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Clc04G03310 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G03310
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description1,4-alpha-glucan branching enzyme
Genome locationClcChr04:10531947..10534596
RNA-Seq ExpressionClc04G03310
SyntenyClc04G03310
Gene Ontology termsGO:0005978 - glycogen biosynthetic process (biological process)
GO:0005983 - starch catabolic process (biological process)
GO:0019252 - starch biosynthetic process (biological process)
GO:0009501 - amyloplast (cellular component)
GO:0003844 - 1,4-alpha-glucan branching enzyme activity (molecular function)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
GO:0043169 - cation binding (molecular function)
GO:0102752 - 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis) (molecular function)
InterPro domainsIPR037439 - 1,4-alpha-glucan-branching enzyme


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACE88265.1 rice starch branching enzyme [Oryza sativa Japonica Group]3.0e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
ACY56134.1 starch branching enzyme 3 [Oryza sativa Indica Group]3.0e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
AFN27052.1 starch branching enzyme 3 [Oryza sativa Japonica Group]3.0e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
XP_015627503.1 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic [Oryza sativa Japonica Group]3.0e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
XP_042049313.1 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic-like [Salvia splendens]3.0e-0976.74Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA      GQ
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
TrEMBL top hitse value%identityAlignment
A2X5K0 1,4-alpha-glucan branching enzyme1.5e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
D0TZK1 1,4-alpha-glucan branching enzyme1.5e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
I6VRB8 1,4-alpha-glucan branching enzyme1.5e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
Q0E0R5 1,4-alpha-glucan branching enzyme1.5e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
Q6H6P8 1,4-alpha-glucan branching enzyme1.5e-0974.42Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPRA  +   G+
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ
SwissProt top hitse value%identityAlignment
O23647 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic2.6e-1188.24Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPR
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
Q04446 1,4-alpha-glucan-branching enzyme1.7e-1078.38Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAIN
        H +IRLIT GLGGEGYLNFMG EFGHPEW+ FPR  N
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAIN
Q08047 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic2.6e-1188.24Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPR
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
Q41058 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic2.6e-1188.24Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPR
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
Q9LZS3 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic2.6e-1188.24Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPR
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
Arabidopsis top hitse value%identityAlignment
AT2G36390.1 starch branching enzyme 2.11.8e-1288.24Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPR
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
AT3G20440.1 Alpha amylase family protein1.0e-0735Show/hide
Query:  KGVIDVLKSFKKIHPTIYKGFKNDQEV------HQDPSFKEINGLGLPLPFWRNSVFETIGHHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIF
        K   D + S+ + H     G ++  E+      +  P  KE+   G+ L            H +IRLIT   GG  YLNFMG EFGHPE + FP   N F
Subjt:  KGVIDVLKSFKKIHPTIYKGFKNDQEV------HQDPSFKEINGLGLPLPFWRNSVFETIGHHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIF
AT3G20440.2 Alpha amylase family protein1.0e-0735Show/hide
Query:  KGVIDVLKSFKKIHPTIYKGFKNDQEV------HQDPSFKEINGLGLPLPFWRNSVFETIGHHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIF
        K   D + S+ + H     G ++  E+      +  P  KE+   G+ L            H +IRLIT   GG  YLNFMG EFGHPE + FP   N F
Subjt:  KGVIDVLKSFKKIHPTIYKGFKNDQEV------HQDPSFKEINGLGLPLPFWRNSVFETIGHHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIF
AT3G20440.3 Alpha amylase family protein1.0e-0735Show/hide
Query:  KGVIDVLKSFKKIHPTIYKGFKNDQEV------HQDPSFKEINGLGLPLPFWRNSVFETIGHHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIF
        K   D + S+ + H     G ++  E+      +  P  KE+   G+ L            H +IRLIT   GG  YLNFMG EFGHPE + FP   N F
Subjt:  KGVIDVLKSFKKIHPTIYKGFKNDQEV------HQDPSFKEINGLGLPLPFWRNSVFETIGHHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIF
AT5G03650.1 starch branching enzyme 2.21.8e-1288.24Show/hide
Query:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR
        H +IRLITMGLGGEGYLNFMG EFGHPEWI FPR
Subjt:  HHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACCAGGAACACCTCCAAGAATCCTGGCCCTCCTTCCTTAGATGCTTCATCCTCTTCTCATCGATCCCTCAACCAACGCTTGACTCATGTGGAAGCTTCTATTGG
AGAGCTTAACACAAGGCTTCTAGATGTGCAGTCCAACATGGTTGGCCTTACGGCTACAATGAACAACACCATAACCGTCTATCCAATCAAGAACAATTCGACAATGCAAT
TCGCGGCCAAGAATGTGGGAATTATCATCAAGATTTTCACGGGCGTGATCAACAAAATCGCCAAGAATATCAAAGACGTGACCAACGAAATTGCCAAGAATATCAAAGGC
GTGATCGATGTGCTCAAGAGCTTCAAGAAGATCCACCCCACCATTTACAAGGGCTTCAAGAATGACCAAGAAGTTCATCAAGACCCTTCATTCAAAGAAATCAACGGCTT
AGGCCTGCCCTTGCCCTTTTGGAGGAATTCAGTTTTTGAAACCATTGGCCACCATTTGATAAGGCTTATTACTATGGGTTTGGGTGGAGAAGGATATCTGAATTTCATGG
GAATTGAATTTGGACATCCTGAGTGGATCGGTTTTCCAAGGGCGATCAACATTTTCCTGGTGGGGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGACCAGGAACACCTCCAAGAATCCTGGCCCTCCTTCCTTAGATGCTTCATCCTCTTCTCATCGATCCCTCAACCAACGCTTGACTCATGTGGAAGCTTCTATTGG
AGAGCTTAACACAAGGCTTCTAGATGTGCAGTCCAACATGGTTGGCCTTACGGCTACAATGAACAACACCATAACCGTCTATCCAATCAAGAACAATTCGACAATGCAAT
TCGCGGCCAAGAATGTGGGAATTATCATCAAGATTTTCACGGGCGTGATCAACAAAATCGCCAAGAATATCAAAGACGTGACCAACGAAATTGCCAAGAATATCAAAGGC
GTGATCGATGTGCTCAAGAGCTTCAAGAAGATCCACCCCACCATTTACAAGGGCTTCAAGAATGACCAAGAAGTTCATCAAGACCCTTCATTCAAAGAAATCAACGGCTT
AGGCCTGCCCTTGCCCTTTTGGAGGAATTCAGTTTTTGAAACCATTGGCCACCATTTGATAAGGCTTATTACTATGGGTTTGGGTGGAGAAGGATATCTGAATTTCATGG
GAATTGAATTTGGACATCCTGAGTGGATCGGTTTTCCAAGGGCGATCAACATTTTCCTGGTGGGGCAATAA
Protein sequenceShow/hide protein sequence
MVTRNTSKNPGPPSLDASSSSHRSLNQRLTHVEASIGELNTRLLDVQSNMVGLTATMNNTITVYPIKNNSTMQFAAKNVGIIIKIFTGVINKIAKNIKDVTNEIAKNIKG
VIDVLKSFKKIHPTIYKGFKNDQEVHQDPSFKEINGLGLPLPFWRNSVFETIGHHLIRLITMGLGGEGYLNFMGIEFGHPEWIGFPRAINIFLVGQ