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Clc04G03530 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G03530
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L18
Genome locationClcChr04:11132260..11134057
RNA-Seq ExpressionClc04G03530
SyntenyClc04G03530
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]1.5e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

XP_008462699.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]8.7e-5198.25Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]1.9e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]4.3e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]5.7e-5094.74Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPY+LKMHFTNK+VSAQVIHS+TATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A0A0L0Z6 Uncharacterized protein2.7e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

A0A1S3CHJ0 50S ribosomal protein L184.2e-5198.25Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

A0A5D3DYC1 50S ribosomal protein L184.2e-5198.25Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620259.4e-5196.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679402.1e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L181.7e-0944.57Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK
        L +H T + V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L KG+ AV       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK

A8IAP8 50S ribosomal protein L187.8e-1044.57Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK
        L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK

B6EPU1 50S ribosomal protein L181.7e-0945.65Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK
        L +H T +   AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK

B7VLE1 50S ribosomal protein L181.3e-0943.48Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK
        L +H T + V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK

P52863 50S ribosomal protein L187.8e-1044.57Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK
        L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein2.8e-0727.72Show/hide
Query:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAG
        R   Y++P+ L +  + +FVSA + H  T    + A +  K +++ + S  D+ A   IG++L ER     +       + + K+ GK++AV+ S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAG

Query:  I
        I
Subjt:  I

AT3G20230.1 Ribosomal L18p/L5e family protein9.4e-1133.66Show/hide
Query:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAG
        R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IGKL+ ER +   + AV    ++ ++  GK+  VID+++E G
Subjt:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAG

Query:  I
        I
Subjt:  I

AT3G22450.1 Ribosomal L18p/L5e family protein3.5e-0530.21Show/hide
Query:  PYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKL
        P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R L   I  V    ++  K  GK++ V+ ++ + G+ +
Subjt:  PYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKL

AT3G45020.1 Ribosomal L18p/L5e family protein3.5e-0530.63Show/hide
Query:  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVI
        LK YVL++  + K+++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L  RL ++G+       +   +K+E +  G     KV AVI
Subjt:  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVI

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein4.9e-4479.82Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPP V+PPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAG+KLL
Subjt:  AVIDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTC
TGAAACAGCCACGGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCTACAAGGGACGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GAGAGAGACTATTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTAAGGGAAGCAGGT
ATTAAGCTACTTTGA
mRNA sequenceShow/hide mRNA sequence
TTTAAAACTAAACCCTCGTTTCTTTCATTTTTTCGTTAGTGTCCCTCTCTCTCTCTTCAGTTGTGTGTTACTGTAGCCGATAGGCGTGTTCTGCCGGAAACCTCACGCTG
CCGCCACCGTTTTCCATCAAGAGTATAATTGAATTGGACTAGCAAAGGGAGATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGT
GTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACGGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCA
TGGAGTCTACAAGGGACGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGACTATTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAG
AAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTAAGGGAAGCAGGTATTAAGCTACTTTGATTTTCTTTCTTTCTTTATTTATTTTTTTGGTTGGAGGGGGTGCT
CAATTTGCTTCATTTTGCCTGGTTTGTTGTTGGGCTTCATCCATCACTGCCCAATATTATCTTTATTTGGAATGGCAATCTGATGAGATGCATTATTGGACTTTTTGTCT
AAGTGTTTTAAGTGAAATGTTTTCTCCCAACATTTTTGGATGATAAACTATAACTAAGACCTTCGTTTGAT
Protein sequenceShow/hide protein sequence
MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAG
IKLL