CuGenDBv2

Gene ID	Clc04G03550
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Genome location	ClcChr04:11336761..11340446
RNA-Seq Expression	Clc04G03550
Synteny	Clc04G03550
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

QJQ78649.1 hypothetical chloroplast RF21 [Meristotropis bucharica]

1.0e-13

83.64

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI
        SSGLIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKN+S YQM ++ P +I
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI

QJQ79013.1 hypothetical chloroplast RF21 [Glycyrrhiza triphylla]

1.0e-13

83.64

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI
        SSGLIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKN+S YQM ++ P +I
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI

QVX27542.1 Ycf2 [Glycyrrhiza inflata]

1.0e-13

83.64

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI
        SSGLIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKN+S YQM ++ P +I
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI

QXO02788.1 Ycf2 [Cheirostylis moniliformis]

1.0e-13

83.64

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI
        +S  IDD+EREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDS YQM ++ PRSI
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI

YP_009560879.1 Ycf2 [Trichosanthes kirilowii]

8.0e-14

74.6

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S LIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM    G+   R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

TrEMBL top hits

e value

%identity

Alignment

A0A410HFC5 Protein Ycf2

3.9e-14

74.6

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S LIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM    G+   R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

A0A6H0EQQ7 Protein Ycf2

3.9e-14

74.6

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S LIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM    G+   R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

A0A6H0ERE1 Protein Ycf2

3.9e-14

74.6

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S LIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM    G+   R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

A0A6H0EVH3 Protein Ycf2

3.9e-14

74.6

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S LIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM    G+   R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

A0A6M4EBK0 Protein Ycf2

5.0e-14

83.64

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI
        SSGLIDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKN+S YQM ++ P +I
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI

SwissProt top hits

e value

%identity

Alignment

A1XFZ9 Protein Ycf2

6.8e-16

81.82

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI
        +S LIDD+EREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM ++ P SI
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI

A4GYV4 Protein Ycf2

1.5e-15

73.02

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S  IDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM    G    R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

B1NWJ3 Protein Ycf2

1.5e-15

73.02

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S  IDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM    G    R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

Q14F97 Protein Ycf2

1.5e-15

73.02

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S  IDDKEREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM    G    R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

Q6EVY7 Protein Ycf2

6.8e-16

81.82

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI
        +S LIDD+EREFLVQFSTLTTEKRIDQILL+LTHSDHLSKNDS YQM ++ P SI
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.0e-15

69.84

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S  IDDKEREFLVQFSTL  EKRIDQILL+LTHSDHLSKNDS YQM    G    R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.0e-15

69.84

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Query:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH
        +S  IDDKEREFLVQFSTL  EKRIDQILL+LTHSDHLSKNDS YQM    G    R +++IH
Subjt:  SSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQM----GLQAPRSILEIH

Sequences

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CDS sequence

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ATGGAGAATAATCCGGGAGGGGGTGTGACAGGGTGTGACAGCAGCGGTTTGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTGACGACAGAAAAAAG
GATTGATCAAATTCTATTGAATCTGACTCATAGTGATCATTTATCAAAGAATGACTCTTGTTATCAAATGGGTCTTCAAGCCCCACGCTCGATTCTCGAGATTCATGGGC
CATCTCGTGAAGATCTTCGATCTAAACCTTTGCATCAACTTTCTCTGTCAATCTCAACCACGCTTTCGCTATCACAAGAAAATAACGACCAAATAGCTATCGCTCGCTCA
ATTGCTTCACATATTATGAAAGTCGCATTGCCCGAAGGGGGCATGCTGCAAGAGCATAGGGTGGCGGGGACTTCGACTGCCTTGTATCAGGTGAAGATAAGGGGTGGTAG
GCTTAGTAGGGCTCAAACCTACAATATAACTGTTATGAGTGATTCTGACCTGATTTTTCGCTGCCTTGCGTTTCACATTTATCACGTTGGCAACCCTTCAACGCAGGTTG
ATGCGTTGGCAACCCATGGATGCGTTGGCATAATTAAACTCATGAACCCAAGTTATCCGTGGACGCATATCAACAAGGCAACAGAAAATCATATACGAATCTTGAGAGAT
TGTCGGGAGATTGATATGCTTGATATGAGGCGAGAGTGGTGCATTGAAATTAAACCGGAAATCACGCGATTAGGCGAGATGGACGCAAGGCAGAAATTCAGCCTCCAATC
ATGCAAATTTGCCAACGGCAACGCAACATCTAATAAAAAGGCAAACCTGAAGACGAAAATGTGGTTGAACCTCTCGGAAGAATTCCTAAGTGATAACAGAGTTCTCTCCA
GACGACAACTAGAGACAAATAGCTCGAAAGAGAAGAGTCTTCCCTCCGCCTGA

mRNA sequence

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Protein sequence

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MENNPGGGVTGCDSSGLIDDKEREFLVQFSTLTTEKRIDQILLNLTHSDHLSKNDSCYQMGLQAPRSILEIHGPSREDLRSKPLHQLSLSISTTLSLSQENNDQIAIARS
IASHIMKVALPEGGMLQEHRVAGTSTALYQVKIRGGRLSRAQTYNITVMSDSDLIFRCLAFHIYHVGNPSTQVDALATHGCVGIIKLMNPSYPWTHINKATENHIRILRD
CREIDMLDMRREWCIEIKPEITRLGEMDARQKFSLQSCKFANGNATSNKKANLKTKMWLNLSEEFLSDNRVLSRRQLETNSSKEKSLPSA

Clc04G03550 (gene) of Watermelon (cordophanus) v2 genome