; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G03895 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G03895
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr04:12969802..12972286
RNA-Seq ExpressionClc04G03895
SyntenyClc04G03895
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]2.9e-1752.58Show/hide
Query:  VINYSKSMF-ISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLR
        ++NY KSMF +S+NT   V + I+  L +  +  +GQYLGLPSQ S+ KCQVF+N+ +++W+ LQG KEKLF    KEVLI  V QAIP Y+MS  R
Subjt:  VINYSKSMF-ISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLR

XP_030923017.1 uncharacterized protein LOC115949892 [Quercus lobata]4.9e-1748.62Show/hide
Query:  VLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIP
        +L  YEHAS Q IN  K ++F S NTH EV + I+  LG+  ++   QYLGLPS + + K + FS +K++IWK L+G KE+L  +  +E+L+  V QAIP
Subjt:  VLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIP

Query:  IYTMSRLRL
        IYTMS  RL
Subjt:  IYTMSRLRL

XP_030929772.1 uncharacterized protein LOC115955672 [Quercus lobata]2.5e-1647.71Show/hide
Query:  VLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIP
        +L  YEHAS Q IN  K ++F S NTH EV + I+  LG+  ++   QYLGLPS + + K + FS +K++IWK L+G KE+L  +  +E+L+  V QAIP
Subjt:  VLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIP

Query:  IYTMSRLRL
        I+TMS  RL
Subjt:  IYTMSRLRL

XP_030936294.1 uncharacterized protein LOC115961454 [Quercus lobata]7.9e-1544.64Show/hide
Query:  LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQ
        L ++L TYE AS Q IN +K ++F SK+T ++V   I+EALG+       +YL LPS + + K + F+NLK +IWK LQG + KL     +E+L+  V Q
Subjt:  LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQ

Query:  AIPIYTMSRLRL
        A+P YTMS  +L
Subjt:  AIPIYTMSRLRL

XP_030968750.1 uncharacterized protein LOC115989220 [Quercus lobata]6.0e-1549.07Show/hide
Query:  LFQVLKTYEHASMQVINYSKS-MFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQ
        L ++LK YE AS Q +N  KS +  S NT  E  S++ E LG    T  G+YLGLPS I K K QVF+ +K+++ K L G KEK+     KE+LI  VTQ
Subjt:  LFQVLKTYEHASMQVINYSKS-MFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQ

Query:  AIPIYTMS
         IP YTMS
Subjt:  AIPIYTMS

TrEMBL top hitse value%identityAlignment
A0A2N9G5C3 Uncharacterized protein5.0e-1546.9Show/hide
Query:  VLFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVT
        VL  +LK YE AS Q IN  K + F SKNT   V S+I    G   ++   +YLGLPS + + K + F+ +KD+IWK LQG KE L  +  +E+LI  V 
Subjt:  VLFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVT

Query:  QAIPIYTMSRLRL
        QAIPIY MS  +L
Subjt:  QAIPIYTMSRLRL

A0A2N9H997 Uncharacterized protein5.0e-1546.43Show/hide
Query:  VLFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVT
        VL Q+L TYEHAS Q +N  K ++F S NT       I +  G   +    +YLGLP  I K K Q F+ +KD++W+ LQG KEKL  +  +EVLI  V 
Subjt:  VLFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVT

Query:  QAIPIYTMSRLR
        QAIP Y MS  R
Subjt:  QAIPIYTMSRLR

A0A2N9I946 Uncharacterized protein2.2e-1545.54Show/hide
Query:  LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQ
        L+ +LK YE AS Q IN  K ++F SKNT   + + I    G   S+   +YLGLP  + + K + F+ +KD+IWK LQG KEKL  +  +E+LI  V Q
Subjt:  LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQ

Query:  AIPIYTMSRLRL
        AIPIY MS  +L
Subjt:  AIPIYTMSRLRL

A0A2N9J936 Uncharacterized protein2.2e-1545.54Show/hide
Query:  LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQ
        L+ +LK YE AS Q IN  K ++F SKNT   + + I    G   S+   +YLGLP  + + K + F+ +KD+IWK LQG KEKL  +  +E+LI  V Q
Subjt:  LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQ

Query:  AIPIYTMSRLRL
        AIPIY MS  +L
Subjt:  AIPIYTMSRLRL

A0A6J1CV63 uncharacterized protein LOC1110146621.4e-1752.58Show/hide
Query:  VINYSKSMF-ISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLR
        ++NY KSMF +S+NT   V + I+  L +  +  +GQYLGLPSQ S+ KCQVF+N+ +++W+ LQG KEKLF    KEVLI  V QAIP Y+MS  R
Subjt:  VINYSKSMF-ISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGAAGAGAGAAGAGGGGAGAATCAAACGACCGAAAATAAAACTTGCCCGGTTATTAGGCCGCTAGATGCAAAAGATCGCAATGTGTTGAGATTGTTACATTCTCG
ATCTTTCTCAACGTGGGTAGTCACAGACACTTGTGATCATCGAGAGGATTGCATCAAGACCAGGAAATCCTCTTTCACCCTATCTGCTTCTCATATTCGAAAGGTCTTTC
AACCCTTTTTCAAGTGGAGAGAAGAGGTTCTTTTCCAGGTGTTGAAGACATATGAGCATGCCTCTATGCAAGTGATCAACTATAGCAAATCCATGTTTATCAGCAAGAAT
ACCCATTGGGAGGTGTTTAGTAAAATCCAAGAAGCCTTGGGGATTTGTTATTCTACCTCATTAGGTCAATACCTGGGACTACCTTCGCAAATCTCTAAGTGTAAATGTCA
AGTCTTTAGTAATCTTAAGGATCAAATTTGGAAGCTTCTCCAAGGGTCGAAGGAAAAGCTCTTTCCGAGGGACGATAAAGAAGTGCTAATTAATGTCGTGACGCAAGCCA
TACCAATTTATACTATGAGTAGACTTCGTCTGCTTAGGGAGCCTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGAAGAGAGAAGAGGGGAGAATCAAACGACCGAAAATAAAACTTGCCCGGTTATTAGGCCGCTAGATGCAAAAGATCGCAATGTGTTGAGATTGTTACATTCTCG
ATCTTTCTCAACGTGGGTAGTCACAGACACTTGTGATCATCGAGAGGATTGCATCAAGACCAGGAAATCCTCTTTCACCCTATCTGCTTCTCATATTCGAAAGGTCTTTC
AACCCTTTTTCAAGTGGAGAGAAGAGGTTCTTTTCCAGGTGTTGAAGACATATGAGCATGCCTCTATGCAAGTGATCAACTATAGCAAATCCATGTTTATCAGCAAGAAT
ACCCATTGGGAGGTGTTTAGTAAAATCCAAGAAGCCTTGGGGATTTGTTATTCTACCTCATTAGGTCAATACCTGGGACTACCTTCGCAAATCTCTAAGTGTAAATGTCA
AGTCTTTAGTAATCTTAAGGATCAAATTTGGAAGCTTCTCCAAGGGTCGAAGGAAAAGCTCTTTCCGAGGGACGATAAAGAAGTGCTAATTAATGTCGTGACGCAAGCCA
TACCAATTTATACTATGAGTAGACTTCGTCTGCTTAGGGAGCCTTTGTGA
Protein sequenceShow/hide protein sequence
MREERRGENQTTENKTCPVIRPLDAKDRNVLRLLHSRSFSTWVVTDTCDHREDCIKTRKSSFTLSASHIRKVFQPFFKWREEVLFQVLKTYEHASMQVINYSKSMFISKN
THWEVFSKIQEALGICYSTSLGQYLGLPSQISKCKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLRLLREPL