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Clc04G03980 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G03980
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr04:13642336..13642890
RNA-Seq ExpressionClc04G03980
SyntenyClc04G03980
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]8.9e-2152Show/hide
Query:  PLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE
        P  HGT  KLG   +E+WIP++YEKLPDFCY CG+VGHV QEC+E  D+ +EG++FG+WLR+SQ+S+ + +GRR ++  Q    RG G G+G  +FK+++
Subjt:  PLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE

TXG70052.1 hypothetical protein EZV62_004987 [Acer yangbiense]7.5e-1236.36Show/hide
Query:  MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR--
        MC +++ A  LA  I     +   DS    G+ ++V+V++ I +PLK    +KLG   E   + + YE+LPDFC+ CG++GH+ +EC   D+E+K+G   
Subjt:  MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR--

Query:  ----KFGIWLRESQSSKGVVR
            +FG WL+   S +GV R
Subjt:  ----KFGIWLRESQSSKGVVR

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]9.9e-1237.14Show/hide
Query:  CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEE-EDDESKEGRKF
        C +K  AT L N+I +FE V    +    G  L+VRV+  + +PL  G  + L   +   WIPI YE+LPDF Y CG++ H+ ++C +   D   +  ++
Subjt:  CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEE-EDDESKEGRKF

Query:  GIWLR
        G WLR
Subjt:  GIWLR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.9e-1130.73Show/hide
Query:  CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDD--ESKEGRK
        C S + A  L   +   E + G  +  + G  ++VRVK+ + +PL+ G  +K  +  ++ W P+ YEKLPDFCY CGK+GH  +ECE+      +    +
Subjt:  CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDD--ESKEGRK

Query:  FGIWLRESQSSKGVVR---------GRRDINFQNQGGRGWGRGRGTSFKKEER-----NPGRAEKQAAKTNLPERDDEE
        +G WLR +   K V           GR     Q  GGRG   GRG   +++E       P  + ++A +  +    +EE
Subjt:  FGIWLRESQSSKGVVR---------GRRDINFQNQGGRGWGRGRGTSFKKEER-----NPGRAEKQAAKTNLPERDDEE

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.3e-1336.97Show/hide
Query:  SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRK
        +K  A  L N+I  F  V   + G   G +L++RV + I +PL+ G  I +   +   WIPI YE+LPDFCY CG +GH   +C+       D+S+   +
Subjt:  SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRK

Query:  FGIWLRESQSSKGVVRGRR
        +G WLR   S  G  +GR+
Subjt:  FGIWLRESQSSKGVVRGRR

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein9.9e-1857.14Show/hide
Query:  KKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECE
        +KY  AL NSI  FE V   +  R  GE LKVR K+ ++Q L H TNIKLG   +E+ IP+TYEKL DFCY CG +GHV QECE
Subjt:  KKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECE

A0A5C7IND1 CCHC-type domain-containing protein3.7e-1236.36Show/hide
Query:  MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR--
        MC +++ A  LA  I     +   DS    G+ ++V+V++ I +PLK    +KLG   E   + + YE+LPDFC+ CG++GH+ +EC   D+E+K+G   
Subjt:  MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR--

Query:  ----KFGIWLRESQSSKGVVR
            +FG WL+   S +GV R
Subjt:  ----KFGIWLRESQSSKGVVR

A0A5D3C0K2 Reverse transcriptase4.3e-2152Show/hide
Query:  PLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE
        P  HGT  KLG   +E+WIP++YEKLPDFCY CG+VGHV QEC+E  D+ +EG++FG+WLR+SQ+S+ + +GRR ++  Q    RG G G+G  +FK+++
Subjt:  PLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE

A0A6J1BSZ1 uncharacterized protein LOC1110054814.8e-1237.14Show/hide
Query:  CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEE-EDDESKEGRKF
        C +K  AT L N+I +FE V    +    G  L+VRV+  + +PL  G  + L   +   WIPI YE+LPDF Y CG++ H+ ++C +   D   +  ++
Subjt:  CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEE-EDDESKEGRKF

Query:  GIWLR
        G WLR
Subjt:  GIWLR

A0A6J1DU55 uncharacterized protein LOC1110231351.1e-1336.97Show/hide
Query:  SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRK
        +K  A  L N+I  F  V   + G   G +L++RV + I +PL+ G  I +   +   WIPI YE+LPDFCY CG +GH   +C+       D+S+   +
Subjt:  SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRK

Query:  FGIWLRESQSSKGVVRGRR
        +G WLR   S  G  +GR+
Subjt:  FGIWLRESQSSKGVVRGRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTCAGCAAGAAATATGCTACAGCCCTGGCGAACTCAATATGCATTTTTGAAGGAGTGGGTGGAAGAGATTCAGGGCGTTTTGGGGGCGAAACTTTGAAGGTTAG
AGTTAAGATGTATATTCGGCAACCTCTAAAACATGGAACAAATATCAAGCTAGGAACCAAGGTGGAGGAAAGATGGATTCCCATTACTTACGAAAAATTACCAGATTTCT
GCTATATTTGCGGCAAGGTGGGTCATGTATTCCAAGAATGCGAAGAGGAGGACGATGAAAGTAAAGAGGGTCGAAAATTTGGAATATGGCTACGGGAATCTCAGAGTAGT
AAGGGAGTTGTTAGGGGAAGAAGAGATATCAATTTTCAAAACCAAGGTGGAAGAGGTTGGGGAAGGGGAAGAGGGACCAGTTTCAAGAAGGAAGAAAGGAACCCAGGGAG
AGCGGAAAAGCAAGCAGCAAAAACGAATCTGCCAGAAAGGGATGATGAGGAAATTGATTCCGTAAAAGGAAAAAACAAAGTGACCCAAAAACTTGATGCGCACTTTGAGT
GTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTTCAGCAAGAAATATGCTACAGCCCTGGCGAACTCAATATGCATTTTTGAAGGAGTGGGTGGAAGAGATTCAGGGCGTTTTGGGGGCGAAACTTTGAAGGTTAG
AGTTAAGATGTATATTCGGCAACCTCTAAAACATGGAACAAATATCAAGCTAGGAACCAAGGTGGAGGAAAGATGGATTCCCATTACTTACGAAAAATTACCAGATTTCT
GCTATATTTGCGGCAAGGTGGGTCATGTATTCCAAGAATGCGAAGAGGAGGACGATGAAAGTAAAGAGGGTCGAAAATTTGGAATATGGCTACGGGAATCTCAGAGTAGT
AAGGGAGTTGTTAGGGGAAGAAGAGATATCAATTTTCAAAACCAAGGTGGAAGAGGTTGGGGAAGGGGAAGAGGGACCAGTTTCAAGAAGGAAGAAAGGAACCCAGGGAG
AGCGGAAAAGCAAGCAGCAAAAACGAATCTGCCAGAAAGGGATGATGAGGAAATTGATTCCGTAAAAGGAAAAAACAAAGTGACCCAAAAACTTGATGCGCACTTTGAGT
GTTAA
Protein sequenceShow/hide protein sequence
MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKVEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSS
KGVVRGRRDINFQNQGGRGWGRGRGTSFKKEERNPGRAEKQAAKTNLPERDDEEIDSVKGKNKVTQKLDAHFEC