CuGenDBv2

Gene ID	Clc04G04010
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	ribosomal RNA-processing protein 17-like
Genome location	ClcChr04:13893170..13899485
RNA-Seq Expression	Clc04G04010
Synteny	Clc04G04010
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]

3.7e-71

78.57

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Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKNDGEEGGE+AQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEAMRR RIEARK            KRKLEKDLVLYGGV
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADR VD+QN+D ED    EEE+PLA  SE   YD+GN+K+TVTTSEVSRE EID I+KPQTA  QL  KDKKHNLPI KKK FKKV+KQRSRPK +SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
        RDKKKGRKKK
Subjt:  RDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

3.3e-72

78.57

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Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKNDG+EGGE+AQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RK            KRK EK+LVLYGG+
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADRPVDEQN+DHE    EEEEKP A +SETT YDSGNIK+TV TSEVSR+ EI  I+K QTATTQL AKDKKHNLPI KKKPFKKV+KQ+SRPKP+SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
        RDKKKGRKKK
Subjt:  RDKKKGRKKK

XP_022926799.1 ribosomal RNA-processing protein 17 [Cucurbita moschata]

1.7e-71

76.19

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Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RK            KRK+EKDLVL+GGV
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADRPVDEQN+D +D D++EEEKPLA +SETTMYDSGNIK+TVTTSEV R+EEID I+KPQ +T+QL AKDKKH+LPI KKKPFKKV++++SR K +SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
         DKKKGRKKK
Subjt:  RDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

3.1e-70

74.76

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Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RK            KRK+EK+LVL+GGV
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADRPVDEQN+D +D D++EEEKPLA +SETT YDSGNIK+TVTTSEV R+EEID I+KPQ +T+QL AKDKKH+LP+ KKKPFKKV++++SR K +SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
         DKKKGRKKK
Subjt:  RDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

3.1e-78

80.95

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Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MV+NDGEEG E+AQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA+RRKRIEARK            KR+LEKDLVLYGGV
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADRPVDE+N+DHE+ +++EEEKPLA  SETT YDSGNIK+TV TSEVSREEEID I+KPQTATTQLFAKDKKHNLP+ KKKPFKKV+KQRSRPK +SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
        RDK+KG+KKK
Subjt:  RDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

5.7e-70

77.83

Show/hide

Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKNDGEEGGE+AQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEAMRR RIEARK            KRKLEKDLVL+GGV
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTA--TTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQ
        LPADR VD+QN    D+   EEE+PLA LSE T YD+GN+K+TVTTSEVSRE+EID I+KPQTA  T QL  KDKKHNLPI KKK FKKV+KQR RPK +
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTA--TTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQ

Query:  SKRDKKKGRKKK
        SKRDKKKGRKKK
Subjt:  SKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

1.8e-71

78.57

Show/hide

Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKNDGEEGGE+AQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEAMRR RIEARK            KRKLEKDLVLYGGV
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADR VD+QN+D ED    EEE+PLA  SE   YD+GN+K+TVTTSEVSRE EID I+KPQTA  QL  KDKKHNLPI KKK FKKV+KQRSRPK +SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
        RDKKKGRKKK
Subjt:  RDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

1.6e-72

78.57

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Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKNDG+EGGE+AQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RK            KRK EK+LVLYGG+
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADRPVDEQN+DHE    EEEEKP A +SETT YDSGNIK+TV TSEVSR+ EI  I+K QTATTQL AKDKKHNLPI KKKPFKKV+KQ+SRPKP+SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
        RDKKKGRKKK
Subjt:  RDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

8.0e-72

76.19

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Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RK            KRK+EKDLVL+GGV
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADRPVDEQN+D +D D++EEEKPLA +SETTMYDSGNIK+TVTTSEV R+EEID I+KPQ +T+QL AKDKKH+LPI KKKPFKKV++++SR K +SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
         DKKKGRKKK
Subjt:  RDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

1.3e-69

74.29

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Query:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV
        MVKN+  EGG + QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RK            KRK+EKDLVL+GGV
Subjt:  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGV

Query:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK
        LPADRPVDEQN+D +D D++EEEKPLA +SETT YDSGNIK+TVTTSEV REEEID I+KPQ +T+QL AKDKKH+LPI KKKPFKKV++++SR K +SK
Subjt:  LPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSK

Query:  RDKKKGRKKK
         DKKKGRKKK
Subjt:  RDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

5.0e-34

53.14

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Query:  EEGGEIAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADR
        EE G +A P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIEARK             RKLE+ +V   G      
Subjt:  EEGGEIAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADR

Query:  PVDEQNEDHEDED----DEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDK---KHNLPIAKKKPFKKVSKQRSRPKPQ
           E NED E ED    ++EE +P A  S TTMYD+G +K+TVTTSE+SREEE + I K +T +T+  +  K   K  +P+ K KP K+ S++RS  K  
Subjt:  PVDEQNEDHEDED----DEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDK---KHNLPIAKKKPFKKVSKQRSRPKPQ

Query:  SKRDKKK
         KRDKKK
Subjt:  SKRDKKK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAA
AGACTTAAGGGATTATGTGACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCA
AAAAGTGTACAGAGAAGGCAATCAGAGCACTGCGCTTAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAG
AATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACGACTTTCTGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAG
TGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGC
CATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

Show/hide mRNA sequence

GCGGCGGTAAACTCAAGTTTGCTATTCTCTCTTTCACGAGAGTATTACAGTTACAGGGCGGTGCCATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCT
CATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGGATTATGTGACTGGATTTCACAAGAGGAAGAAGAA
AAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGTGTACAGAGAAGGCAATCAGAGCACTGCGCTTAAAGAGAA
AATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCA
TTGGCACGACTTTCTGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACA
GACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAA
GTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTAATTATACTAAACTATTTATTCACTCTTTACTGAATGTCCGATGTGACGTGATTTATATGTTGTCCCATG
AGAATATGGAGCGATCTCGCATTGGCTAGGGAATTTGAGGGTCTTGTATTACTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCCTTTTATGAGAAGC
TGAAATCATTCATTCAGAACTCCGAGAAGAAAAAATAACATATTATCCAAGTATCGAAAAATCCTCGTATTACGTTACTGAAAAGGATGTACA

Protein sequence

Show/hide protein sequence

MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQ
NEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSKRDKKKGRKKK

Clc04G04010 (gene) of Watermelon (cordophanus) v2 genome