CuGenDBv2

Gene ID	Clc04G04160
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Genome location	ClcChr04:14482051..14486591
RNA-Seq Expression	Clc04G04160
Synteny	Clc04G04160
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-18

51.69

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG
        MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                                             SLMY MLCTR DICYAVG
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG

Query:  IVSRYQSDPGFDHWAGVK
        IVSRYQS+PG DHW  VK
Subjt:  IVSRYQSDPGFDHWAGVK

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

3.7e-19

52.54

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG
        MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                                             SLMYVMLCTR DICYAVG
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG

Query:  IVSRYQSDPGFDHWAGVK
        IVSRYQS+PG DHW  VK
Subjt:  IVSRYQSDPGFDHWAGVK

KAA0042898.1 gag/pol protein [Cucumis melo var. makuwa]

6.3e-19

65.48

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV-----------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK
        MKDL  AQ+VLG+QI++NR+NKTLA+SQTS IDKML            SLMY MLCTR  ICY+VGIVSRYQS+PG DHW  VK
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV-----------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-18

51.69

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG
        MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                                             SLMY MLCTR DICYAVG
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG

Query:  IVSRYQSDPGFDHWAGVK
        IVSRYQS+PG DHW  VK
Subjt:  IVSRYQSDPGFDHWAGVK

KAA0062410.1 gag/pol protein [Cucumis melo var. makuwa]

1.8e-21

70.59

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK
        MKDLGE Q+VLGIQIIR+RKNK LALSQ + IDKMLV            SLMY MLCTR DICYAVGIVSRYQS+PG DHW  VK
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKM4 Gag/pol protein

1.8e-19

52.54

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG
        MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                                             SLMYVMLCTR DICYAVG
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG

Query:  IVSRYQSDPGFDHWAGVK
        IVSRYQS+PG DHW  VK
Subjt:  IVSRYQSDPGFDHWAGVK

A0A5A7TZD0 Gag/pol protein

5.2e-19

51.69

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG
        MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                                             SLMY MLCTR DICYAVG
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG

Query:  IVSRYQSDPGFDHWAGVK
        IVSRYQS+PG DHW  VK
Subjt:  IVSRYQSDPGFDHWAGVK

A0A5A7UYE8 Gag/pol protein

5.2e-19

51.69

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG
        MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                                             SLMY MLCTR DICYAVG
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG

Query:  IVSRYQSDPGFDHWAGVK
        IVSRYQS+PG DHW  VK
Subjt:  IVSRYQSDPGFDHWAGVK

A0A5D3C1R6 Gag/pol protein

3.1e-19

65.48

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV-----------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK
        MKDL  AQ+VLG+QI++NR+NKTLA+SQTS IDKML            SLMY MLCTR  ICY+VGIVSRYQS+PG DHW  VK
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV-----------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK

A0A5D3DS50 Gag/pol protein

8.6e-22

70.59

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK
        MKDLGE Q+VLGIQIIR+RKNK LALSQ + IDKMLV            SLMY MLCTR DICYAVGIVSRYQS+PG DHW  VK
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-09

33.9

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Query:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG
        MKDLG AQ +LG++I+R R ++ L LSQ   I+++L                                              SLMY M+CTR DI +AVG
Subjt:  MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV---------------------------------------------SLMYVMLCTRLDICYAVG

Query:  IVSRYQSDPGFDHWAGVK
        +VSR+  +PG +HW  VK
Subjt:  IVSRYQSDPGFDHWAGVK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAGATTTGGGTGAGGCACAGTTTGTTCTAGGGATCCAGATCATAAGGAATCGTAAGAACAAAACGTTAGCTTTGTCTCAGACATCTAATATTGACAAGATGCTTGT
CAGCCTTATGTATGTCATGTTGTGTACAAGGCTTGACATTTGTTATGCAGTTGGGATTGTTAGTAGATATCAATCTGATCCAGGATTTGATCATTGGGCTGGAGTAAAAC
CATCCTCAAATTGCTTCAGAGCACAATGTTGTGATCTATTTACAAAGGCTCTCATAGCTAAAGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGAGACATGCAACAT
CTAGTCTACGGGAAGTGGGAGATGGATGCTTTGAGATTTTTGTACCGTCCAACCATTCGTAATGTGTGCAATTGCTCCTTCAGGCAACTTGATCTTAATCTTGAGTTGAC
TATGAACTTCTGTTTACTCGGGATTATCCTTAGATCTGCATTGGTAAGAGCAGCTCAACAGCTCTGGCTCAATATGCCTTCCATTTCAGGGGTAAAACCAGGTAGATAG

mRNA sequence

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Protein sequence

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MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLVSLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVKPSSNCFRAQCCDLFTKALIAKVFEGHLESLGLRDMQH
LVYGKWEMDALRFLYRPTIRNVCNCSFRQLDLNLELTMNFCLLGIILRSALVRAAQQLWLNMPSISGVKPGR

Clc04G04160 (gene) of Watermelon (cordophanus) v2 genome