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Clc04G04190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G04190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPMD domain-containing protein
Genome locationClcChr04:14529078..14530201
RNA-Seq ExpressionClc04G04190
SyntenyClc04G04190
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041618.1 hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa]4.9e-3753.79Show/hide
Query:  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGET
        G MVYF E   SG   LVIL++R+QP + GL+ IVE    G F+D WP LD+N  L  LSVEVP  + +  W+L+S IH+ AP+    LTLG+R++EG+T
Subjt:  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGET

Query:  RWSTIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
        RW T+ KVPGEF F D YWEWLELVV RN R L+   L++ V AS
Subjt:  RWSTIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]7.6e-3855.24Show/hide
Query:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  L  LSVEVP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
         T+ KVPGEF F D YWEWLELVV RN R L+   L+ AV AS
Subjt:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

KAA0053734.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.9e-3754.55Show/hide
Query:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  L  LSVE+P  + +  WIL+S IH+ AP+    LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
         T+ KVPGEF F D YWEWLELVV RN R L+   L+  V AS
Subjt:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

TYK04516.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-3652.41Show/hide
Query:  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGET
        G MVYF E   SG   L+IL++R+QP + GL+ IVE    G F+D WP LD+N  L  LSVE+P  + +  W+L+S IH+ AP+    LTLG+R++EG+T
Subjt:  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGET

Query:  RWSTIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
        RW T+ KVPGEF F D YWEWLELVV RN R L+   L+  V AS
Subjt:  RWSTIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

TYK06433.1 hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa]5.8e-3855.24Show/hide
Query:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  LL LSVEVP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
         T+ KVPGEF F D YWEWL+LVV RN R L+   L+ AV AS
Subjt:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

TrEMBL top hitse value%identityAlignment
A0A5A7TFC8 PMD domain-containing protein2.4e-3753.79Show/hide
Query:  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGET
        G MVYF E   SG   LVIL++R+QP + GL+ IVE    G F+D WP LD+N  L  LSVEVP  + +  W+L+S IH+ AP+    LTLG+R++EG+T
Subjt:  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGET

Query:  RWSTIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
        RW T+ KVPGEF F D YWEWLELVV RN R L+   L++ V AS
Subjt:  RWSTIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

A0A5A7TX42 Uncharacterized protein3.7e-3855.24Show/hide
Query:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  L  LSVEVP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
         T+ KVPGEF F D YWEWLELVV RN R L+   L+ AV AS
Subjt:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

A0A5A7UET3 Putative mitochondrial protein1.4e-3754.55Show/hide
Query:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  L  LSVE+P  + +  WIL+S IH+ AP+    LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
         T+ KVPGEF F D YWEWLELVV RN R L+   L+  V AS
Subjt:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

A0A5D3BXQ4 Putative mitochondrial protein5.3e-3753.15Show/hide
Query:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL++R+Q  + GL+ IVE P  G F+D WP LD+N  L  LSVE+P  + +  W+L+S IHD AP+    LT G+R++EG+T W
Subjt:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
         T+ KVPGEF F D YWEWLELVV RN R L+   L+ AV AS
Subjt:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

A0A5D3C3D7 PMD domain-containing protein2.8e-3855.24Show/hide
Query:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  LL LSVEVP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS
         T+ KVPGEF F D YWEWL+LVV RN R L+   L+ AV AS
Subjt:  STIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGCCGTCACCCTACAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCGCCGTCACCCTACAGGTAGGGATGACCCTGGGATAATGGTTTACTTTGCGGA
GCATGTCTCGTCTGGGCAAACACAGCTCGTGATCCTTGCAGAGAGGCACCAGCCTATAAAGAGTGGACTTACCTTTATTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAG
ATATTTGGCCAGAGTTAGATGACAATATGACCCTCCTCGAGCTATCTGTTGAGGTGCCTTTTCATCAGGAGGAAAAGGTGTGGATCCTAAGGTCGCTGATTCATGACACA
GCCCCTTCCCTGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGCACTATTGTGAAAGTCCCAGGTGAATTCACTTTTATCGACTACTA
TTGGGAATGGTTGGAGCTTGTAGTTAGCCGAAATGAACGGTTTCTTCACGACGTTTGTTTGTTTAATGCGGTGATGGCCTCTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGCCGTCACCCTACAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCGCCGTCACCCTACAGGTAGGGATGACCCTGGGATAATGGTTTACTTTGCGGA
GCATGTCTCGTCTGGGCAAACACAGCTCGTGATCCTTGCAGAGAGGCACCAGCCTATAAAGAGTGGACTTACCTTTATTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAG
ATATTTGGCCAGAGTTAGATGACAATATGACCCTCCTCGAGCTATCTGTTGAGGTGCCTTTTCATCAGGAGGAAAAGGTGTGGATCCTAAGGTCGCTGATTCATGACACA
GCCCCTTCCCTGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGCACTATTGTGAAAGTCCCAGGTGAATTCACTTTTATCGACTACTA
TTGGGAATGGTTGGAGCTTGTAGTTAGCCGAAATGAACGGTTTCTTCACGACGTTTGTTTGTTTAATGCGGTGATGGCCTCTTCATAA
Protein sequenceShow/hide protein sequence
MARRHPTDLSDLKVLATEVRRHPTGRDDPGIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDT
APSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMASS