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Clc04G04220 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G04220
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA repair protein recA-like protein 2
Genome locationClcChr04:14592700..14594281
RNA-Seq ExpressionClc04G04220
SyntenyClc04G04220
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR013765 - DNA recombination and repair protein RecA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033496.1 DNA repair protein recA-like 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-4881.6Show/hide
Query:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLR-QERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC
        M FFLAPS+ RSC LKHFEA+R SSLF+++R + RRDVISC+G+DAC FSSLVDVSEFECDKL+DDTRTTEKDAALRLA++QLAG+FGKESML LQRFF 
Subjt:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLR-QERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC

Query:  SRYAPVISTGSLKLDIALGIGGLPK
        SR APVISTGSLKLD+ALGIGGLPK
Subjt:  SRYAPVISTGSLKLDIALGIGGLPK

XP_022928640.1 DNA repair protein recA homolog 2, mitochondrial isoform X2 [Cucurbita moschata]3.0e-4780Show/hide
Query:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLR-QERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC
        M FFLA S+ RSCRLKHFE +R SSLF+++R + RRDVI+C+G+DAC FSSLVDVSEFECDKL+DDTRTTEKDAALRLA++QLAG+FGKESML LQRFF 
Subjt:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLR-QERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC

Query:  SRYAPVISTGSLKLDIALGIGGLPK
        SR APVISTGSLKLD+ALGIGGLPK
Subjt:  SRYAPVISTGSLKLDIALGIGGLPK

XP_022967812.1 DNA repair protein recA homolog 2, mitochondrial [Cucurbita maxima]4.6e-4881.6Show/hide
Query:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQE-RRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC
        M FFLAPS+ RSCRLK+FEA+R SSLF+++R + RRDVISC G+DAC FSSLVDVSEFECDKL+DDTRTTEKDAALRLA++QLAG+FGKESML LQRFF 
Subjt:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQE-RRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC

Query:  SRYAPVISTGSLKLDIALGIGGLPK
        SR APVISTGSLKLD+ALGIGGLPK
Subjt:  SRYAPVISTGSLKLDIALGIGGLPK

XP_023544350.1 DNA repair protein recA homolog 2, mitochondrial [Cucurbita pepo subsp. pepo]1.2e-4880.95Show/hide
Query:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQE--RRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFF
        M FFLAPS+ RSCRLKHFEA+R SSLF+++R+   RRDV+SC+G+DAC FSSLVDVSEFECDKL+DDTRTTEKDAALRLA++QLAG+FGKESML LQRFF
Subjt:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQE--RRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFF

Query:  CSRYAPVISTGSLKLDIALGIGGLPK
         SR APVISTGSLKLD+ALGIGGLPK
Subjt:  CSRYAPVISTGSLKLDIALGIGGLPK

XP_038883413.1 DNA repair protein recA homolog 2, mitochondrial isoform X1 [Benincasa hispida]5.6e-5491.13Show/hide
Query:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCS
        MSFFLAP L RSCRLKHF+ASRFSSLFHSLRQ RRDVISC GMDAC FSSLVDVSEFECDK+NDDTRTTEKDA LR AISQLAGDFGKESML LQRFF S
Subjt:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCS

Query:  RYAPVISTGSLKLDIALGIGGLPK
        RYAPVISTGSLKLDIALGIGGLPK
Subjt:  RYAPVISTGSLKLDIALGIGGLPK

TrEMBL top hitse value%identityAlignment
A0A1S3CNF8 DNA repair protein recA homolog 2, mitochondrial isoform X16.6e-4580.99Show/hide
Query:  FLAPSLLRSCRLKHFEASRFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYA
        FLA SL RSCRLKHFEASRFSSLFH L Q RRDVISC+G+DAC FSSLVDV E+ECD LNDDT+TTEKD AL  AIS++A DFGKES L+LQR F SRYA
Subjt:  FLAPSLLRSCRLKHFEASRFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYA

Query:  PVISTGSLKLDIALGIGGLPK
         VISTGSLKLDIALGIGGLPK
Subjt:  PVISTGSLKLDIALGIGGLPK

A0A5A7VKJ2 DNA repair protein recA-like protein 26.6e-4580.99Show/hide
Query:  FLAPSLLRSCRLKHFEASRFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYA
        FLA SL RSCRLKHFEASRFSSLFH L Q RRDVISC+G+DAC FSSLVDV E+ECD LNDDT+TTEKD AL  AIS++A DFGKES L+LQR F SRYA
Subjt:  FLAPSLLRSCRLKHFEASRFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYA

Query:  PVISTGSLKLDIALGIGGLPK
         VISTGSLKLDIALGIGGLPK
Subjt:  PVISTGSLKLDIALGIGGLPK

A0A6J1ELF3 DNA repair protein recA homolog 2, mitochondrial isoform X11.4e-4779.37Show/hide
Query:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQE--RRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFF
        M FFLA S+ RSCRLKHFE +R SSLF+++R +  RRDVI+C+G+DAC FSSLVDVSEFECDKL+DDTRTTEKDAALRLA++QLAG+FGKESML LQRFF
Subjt:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQE--RRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFF

Query:  CSRYAPVISTGSLKLDIALGIGGLPK
         SR APVISTGSLKLD+ALGIGGLPK
Subjt:  CSRYAPVISTGSLKLDIALGIGGLPK

A0A6J1ES72 DNA repair protein recA homolog 2, mitochondrial isoform X21.4e-4780Show/hide
Query:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLR-QERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC
        M FFLA S+ RSCRLKHFE +R SSLF+++R + RRDVI+C+G+DAC FSSLVDVSEFECDKL+DDTRTTEKDAALRLA++QLAG+FGKESML LQRFF 
Subjt:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLR-QERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC

Query:  SRYAPVISTGSLKLDIALGIGGLPK
        SR APVISTGSLKLD+ALGIGGLPK
Subjt:  SRYAPVISTGSLKLDIALGIGGLPK

A0A6J1HRU9 DNA repair protein recA homolog 2, mitochondrial2.2e-4881.6Show/hide
Query:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQE-RRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC
        M FFLAPS+ RSCRLK+FEA+R SSLF+++R + RRDVISC G+DAC FSSLVDVSEFECDKL+DDTRTTEKDAALRLA++QLAG+FGKESML LQRFF 
Subjt:  MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQE-RRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFC

Query:  SRYAPVISTGSLKLDIALGIGGLPK
        SR APVISTGSLKLD+ALGIGGLPK
Subjt:  SRYAPVISTGSLKLDIALGIGGLPK

SwissProt top hitse value%identityAlignment
A5ICV8 Protein RecA3.4e-0655.56Show/hide
Query:  KDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK
        K  AL  A+SQ+   FGK S++ +     SR    ISTGSL LDIALGIGGLPK
Subjt:  KDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK

Q05358 Protein RecA2.6e-0655.56Show/hide
Query:  KDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK
        K  AL  A+SQ+   FGK S++ +     SR    ISTGSL LDIALGIGGLPK
Subjt:  KDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK

Q5X4B5 Protein RecA3.4e-0655.56Show/hide
Query:  KDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK
        K  AL  A+SQ+   FGK S++ +     SR    ISTGSL LDIALGIGGLPK
Subjt:  KDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK

Q8RY99 DNA repair protein recA homolog 2, mitochondrial2.9e-2154.37Show/hide
Query:  RFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGG
        RF S    L   RR V++C G +    SSLV+ S+ E D++ DD +  EKD AL LA+SQL+GDF K+S L LQRF+  R   VISTGSL LD+ALG+GG
Subjt:  RFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGG

Query:  LPK
        LPK
Subjt:  LPK

Q9ZUP2 DNA repair protein recA homolog 3, mitochondrial2.2e-0850Show/hide
Query:  TEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK
        ++K+ AL+ A+ Q+   FGK S+++L R    R  PV STGS  LD+ALG+GGLPK
Subjt:  TEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK

Arabidopsis top hitse value%identityAlignment
AT2G19490.1 recA DNA recombination family protein1.5e-0950Show/hide
Query:  TEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK
        ++K+ AL+ A+ Q+   FGK S+++L R    R  PV STGS  LD+ALG+GGLPK
Subjt:  TEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK

AT3G10140.1 RECA homolog 32.1e-2254.37Show/hide
Query:  RFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGG
        RF S    L   RR V++C G +    SSLV+ S+ E D++ DD +  EKD AL LA+SQL+GDF K+S L LQRF+  R   VISTGSL LD+ALG+GG
Subjt:  RFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGSLKLDIALGIGG

Query:  LPK
        LPK
Subjt:  LPK

AT3G32920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.3e-0457.58Show/hide
Query:  LWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK
        ++L R    R  PV STGS  LD+ALG+GGLPK
Subjt:  LWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK

AT3G32920.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.3e-0457.58Show/hide
Query:  LWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK
        ++L R    R  PV STGS  LD+ALG+GGLPK
Subjt:  LWLQRFFCSRYAPVISTGSLKLDIALGIGGLPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTCTTCCTCGCACCTTCACTCTTGCGCTCTTGCCGTCTCAAGCACTTTGAAGCATCTCGCTTTTCCTCTCTGTTCCACTCCCTCCGCCAGGAAAGGAGAGATGT
GATCAGCTGTGTGGGTATGGATGCTTGTCAGTTTTCCTCACTAGTTGATGTTTCGGAGTTCGAATGTGATAAGCTTAATGATGATACTAGAACAACAGAGAAAGATGCTG
CACTACGTTTGGCAATCTCTCAGCTTGCTGGTGATTTTGGAAAGGAATCTATGTTGTGGTTGCAGAGGTTTTTCTGCTCCCGATATGCACCTGTTATTTCTACTGGATCA
TTAAAGCTTGACATTGCTCTTGGGATTGGAGGATTACCTAAGGAGTTAGAGGTGATTCTAAACAAGGGCGATATTCTCACCCAACGAGGTTATTTGGAATTGGTCTGCCC
TGTGGTTGGTAATATACTGGATTTTGGTAATAATTTGTATGTTGAAATTTTGGGTTTGATTCCTAGGGAAGTTTTTCGCAGGTTCTTGGTTTCTAGCATCAAAATGGTGG
TGCATTTCTTGCCTTCTTTGTGGTCGTATAGGCTGCCTTCTGTTATCTTGAGCTTCTTGCTGATTGTTGTTGTTTCTTGTCTTGACCTTGATAGTTTGGTAGCCTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTCTTCCTCGCACCTTCACTCTTGCGCTCTTGCCGTCTCAAGCACTTTGAAGCATCTCGCTTTTCCTCTCTGTTCCACTCCCTCCGCCAGGAAAGGAGAGATGT
GATCAGCTGTGTGGGTATGGATGCTTGTCAGTTTTCCTCACTAGTTGATGTTTCGGAGTTCGAATGTGATAAGCTTAATGATGATACTAGAACAACAGAGAAAGATGCTG
CACTACGTTTGGCAATCTCTCAGCTTGCTGGTGATTTTGGAAAGGAATCTATGTTGTGGTTGCAGAGGTTTTTCTGCTCCCGATATGCACCTGTTATTTCTACTGGATCA
TTAAAGCTTGACATTGCTCTTGGGATTGGAGGATTACCTAAGGAGTTAGAGGTGATTCTAAACAAGGGCGATATTCTCACCCAACGAGGTTATTTGGAATTGGTCTGCCC
TGTGGTTGGTAATATACTGGATTTTGGTAATAATTTGTATGTTGAAATTTTGGGTTTGATTCCTAGGGAAGTTTTTCGCAGGTTCTTGGTTTCTAGCATCAAAATGGTGG
TGCATTTCTTGCCTTCTTTGTGGTCGTATAGGCTGCCTTCTGTTATCTTGAGCTTCTTGCTGATTGTTGTTGTTTCTTGTCTTGACCTTGATAGTTTGGTAGCCTTGTGA
Protein sequenceShow/hide protein sequence
MSFFLAPSLLRSCRLKHFEASRFSSLFHSLRQERRDVISCVGMDACQFSSLVDVSEFECDKLNDDTRTTEKDAALRLAISQLAGDFGKESMLWLQRFFCSRYAPVISTGS
LKLDIALGIGGLPKELEVILNKGDILTQRGYLELVCPVVGNILDFGNNLYVEILGLIPREVFRRFLVSSIKMVVHFLPSLWSYRLPSVILSFLLIVVVSCLDLDSLVAL