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Clc04G04520 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G04520
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCRC domain-containing protein TSO1
Genome locationClcChr04:15864905..15867265
RNA-Seq ExpressionClc04G04520
SyntenyClc04G04520
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057436.1 CRC domain-containing protein TSO1 [Cucumis melo var. makuwa]7.2e-1474.58Show/hide
Query:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE
        F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Subjt:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE

XP_004145421.1 CRC domain-containing protein TSO1 [Cucumis sativus]7.2e-1474.58Show/hide
Query:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE
        F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Subjt:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE

XP_008449927.1 PREDICTED: CRC domain-containing protein TSO1, partial [Cucumis melo]7.2e-1474.58Show/hide
Query:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE
        F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Subjt:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE

XP_022999801.1 protein tesmin/TSO1-like CXC 2 [Cucurbita maxima]6.3e-1066.67Show/hide
Query:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTS-VKSVSPNTE
        F  DESS+RLSVRFKLEK G+ Q E KFEK P  DVMP+T+  GC SST  VKSVSPN++
Subjt:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTS-VKSVSPNTE

XP_038906811.1 protein tesmin/TSO1-like CXC 2 [Benincasa hispida]7.2e-1476.67Show/hide
Query:  FPTDESSFR-LSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE
        F  DESS R LSVRFKLEKHG+TQ EPKFEK P EDVMP+TL  GCPSST VKSVSPN++
Subjt:  FPTDESSFR-LSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE

TrEMBL top hitse value%identityAlignment
A0A0A0LNU4 CRC domain-containing protein3.5e-1474.58Show/hide
Query:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE
        F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Subjt:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE

A0A1S3BP37 CRC domain-containing protein TSO13.5e-1474.58Show/hide
Query:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE
        F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Subjt:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE

A0A5D3E4C7 CRC domain-containing protein TSO13.5e-1474.58Show/hide
Query:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE
        F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Subjt:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE

A0A6J1KE48 protein tesmin/TSO1-like CXC 23.1e-1066.67Show/hide
Query:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTS-VKSVSPNTE
        F  DESS+RLSVRFKLEK G+ Q E KFEK P  DVMP+T+  GC SST  VKSVSPN++
Subjt:  FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTS-VKSVSPNTE

M0THR5 Uncharacterized protein1.7e-1651.26Show/hide
Query:  KNLGTIKRFPAFTLVSRTFFPSTPTTFTLLLHFTMYVTCSAESHENPSEHLALLSNRTKYAPNPTSPTSRRFFVFRTTTHPLFFRSTSSSASSQFNVIPI
        KN GT+ R P  T VS T  PSTPTT T  L  T YVT  AES ENP EH+A   + T+ AP+PTSP   RF VF TTT P F  STS  ASS F   P 
Subjt:  KNLGTIKRFPAFTLVSRTFFPSTPTTFTLLLHFTMYVTCSAESHENPSEHLALLSNRTKYAPNPTSPTSRRFFVFRTTTHPLFFRSTSSSASSQFNVIPI

Query:  QCSFFTSDIFIPSFSFTIP
          S   S +   SF+ T+P
Subjt:  QCSFFTSDIFIPSFSFTIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACCTTGGTACTATAAAGAGATTTCCAGCTTTTACTCTTGTTTCCAGAACCTTCTTCCCGTCCACTCCTACAACCTTTACTCTTCTGCTTCATTTCACGATGTA
TGTCACCTGCAGTGCTGAATCGCACGAGAATCCAAGCGAACACCTCGCACTTCTGTCCAATCGAACTAAATATGCTCCCAATCCTACCTCCCCTACCAGCAGAAGATTCT
TCGTGTTTAGAACCACAACTCACCCTTTGTTCTTCAGATCTACATCTAGCAGCGCCTCCTCGCAGTTCAATGTCATTCCGATTCAATGCTCCTTCTTCACCTCTGACATT
TTTATTCCTTCCTTTAGCTTCACGATTCCTTTTCCAACAGATGAATCCTCCTTTAGATTGAGCGTTCGATTCAAACTCGAGAAGCATGGCATGACTCAAATAGAGCCCAA
GTTTGAGAAAATACCCTATGAGGATGTGATGCCAAAAACACTTTCTTATGGTTGCCCTTCTAGCACAAGTGTTAAGAGTGTTTCTCCCAACACAGAGGAGCAGAGTACAT
TTCAAATTTCACGAGGTATTCTTCATATGTACCATCCCATTGAATCCTCAGAAGCCGAGATAGAAGCGTACCTTCTAGCGTTGGTCGGAGGCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAACCTTGGTACTATAAAGAGATTTCCAGCTTTTACTCTTGTTTCCAGAACCTTCTTCCCGTCCACTCCTACAACCTTTACTCTTCTGCTTCATTTCACGATGTA
TGTCACCTGCAGTGCTGAATCGCACGAGAATCCAAGCGAACACCTCGCACTTCTGTCCAATCGAACTAAATATGCTCCCAATCCTACCTCCCCTACCAGCAGAAGATTCT
TCGTGTTTAGAACCACAACTCACCCTTTGTTCTTCAGATCTACATCTAGCAGCGCCTCCTCGCAGTTCAATGTCATTCCGATTCAATGCTCCTTCTTCACCTCTGACATT
TTTATTCCTTCCTTTAGCTTCACGATTCCTTTTCCAACAGATGAATCCTCCTTTAGATTGAGCGTTCGATTCAAACTCGAGAAGCATGGCATGACTCAAATAGAGCCCAA
GTTTGAGAAAATACCCTATGAGGATGTGATGCCAAAAACACTTTCTTATGGTTGCCCTTCTAGCACAAGTGTTAAGAGTGTTTCTCCCAACACAGAGGAGCAGAGTACAT
TTCAAATTTCACGAGGTATTCTTCATATGTACCATCCCATTGAATCCTCAGAAGCCGAGATAGAAGCGTACCTTCTAGCGTTGGTCGGAGGCGATTGA
Protein sequenceShow/hide protein sequence
MKNLGTIKRFPAFTLVSRTFFPSTPTTFTLLLHFTMYVTCSAESHENPSEHLALLSNRTKYAPNPTSPTSRRFFVFRTTTHPLFFRSTSSSASSQFNVIPIQCSFFTSDI
FIPSFSFTIPFPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTEEQSTFQISRGILHMYHPIESSEAEIEAYLLALVGGD