; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G04650 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G04650
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionsigma factor binding protein 2, chloroplastic
Genome locationClcChr04:16773357..16774358
RNA-Seq ExpressionClc04G04650
SyntenyClc04G04650
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025974.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]6.6e-6076.97Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD
        MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  D
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD

Query:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        DDGASNL++N+NNPSL  ++PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Subjt:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
KAE8649682.1 hypothetical protein Csa_012221 [Cucumis sativus]2.1e-5875.76Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD
        MDA   TG++HR LDA++RRKPTKKTKQP N++ KPIKVVYISNPMKVQTSAS FMALVQELTGQ+ADFPDPSKFPPSAVC GAAS+D ++NT S G  +
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD

Query:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        DDGA+NL++N+NN SL  E+PAEDD LGS Y+DF+DLIFP PVIGNFSGLLPA  AAVVYES AR
Subjt:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
TYK04210.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]2.5e-5976.36Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD
        MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQELTGQ+ADFPDPSK PPSAVC  AAS+D ++NT SGG  D
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD

Query:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        DDGASNL++N+NNPSL  ++PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Subjt:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
XP_008455708.1 PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]6.6e-6076.97Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD
        MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  D
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD

Query:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        DDGASNL++N+NNPSL  ++PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Subjt:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
XP_038882812.1 sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]2.0e-6985.89Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDD
        M+A A TGNNHRILDA++RRKPTKKTKQPNK KPIKVVYISNPMKVQTSAS+FMALVQELTG++ADFPDPSKF PSAVCGGAASSDL+HNTASGG DD+ 
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDD

Query:  GASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        GASNL+MNNNN SLAVELP +DD LGS Y+DF+DLIFPPPVIGNFSGLLP AAAAVVYESYAR
Subjt:  GASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
TrEMBL top hitse value%identityAlignment
A0A0A0L3J8 VQ domain-containing protein1.0e-5875.76Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD
        MDA   TG++HR LDA++RRKPTKKTKQP N++ KPIKVVYISNPMKVQTSAS FMALVQELTGQ+ADFPDPSKFPPSAVC GAAS+D ++NT S G  +
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD

Query:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        DDGA+NL++N+NN SL  E+PAEDD LGS Y+DF+DLIFP PVIGNFSGLLPA  AAVVYES AR
Subjt:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
A0A1S3C276 sigma factor binding protein 2, chloroplastic3.2e-6076.97Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD
        MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  D
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD

Query:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        DDGASNL++N+NNPSL  ++PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Subjt:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
A0A5A7SJV9 Sigma factor binding protein 23.2e-6076.97Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD
        MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  D
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD

Query:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        DDGASNL++N+NNPSL  ++PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Subjt:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
A0A5D3BYM2 Sigma factor binding protein 21.2e-5976.36Show/hide
Query:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD
        MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQELTGQ+ADFPDPSK PPSAVC  AAS+D ++NT SGG  D
Subjt:  MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDD

Query:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
        DDGASNL++N+NNPSL  ++PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Subjt:  DDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like9.3e-5270.55Show/hide
Query:  ARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGA
        A  GTGN+HR+LD +HRRKPTKKTKQPNK KPIKVVYISNPMKVQ SAS FMALVQ+LTGQ+ADFPDPS FPP+AV   AA  D +HNT +  +      
Subjt:  ARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGA

Query:  SNLMMNNNNPSLAVELPAEDD-FLGSIYNDFEDLIFPPPVIGNFSGLLPAAAA-AVVYESYAR
           +MNNNNPSL VE+P EDD FLGS Y+D +DLIFPPPVIGN+  LLPAAAA AV+YESYAR
Subjt:  SNLMMNNNNPSLAVELPAEDD-FLGSIYNDFEDLIFPPPVIGNFSGLLPAAAA-AVVYESYAR
SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic4.4e-0653.33Show/hide
Query:  RRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV
        R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQ+A    PS    +AV
Subjt:  RRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV
Q9LDH1 Sigma factor binding protein 1, chloroplastic7.9e-0856.45Show/hide
Query:  IHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFPPS
        + R+ P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQ+A D  P+P   P S
Subjt:  IHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFPPS
Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein3.1e-0753.33Show/hide
Query:  RRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV
        R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQ+A    PS    +AV
Subjt:  RRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV
AT3G56710.1 sigma factor binding protein 15.6e-0956.45Show/hide
Query:  IHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFPPS
        + R+ P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQ+A D  P+P   P S
Subjt:  IHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFPPS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCCCGCGCCGGCACCGGAAACAACCACAGAATCCTAGACGCCATTCACCGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGT
TGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCC
CCCCCTCCGCCGTCTGCGGCGGCGCCGCCTCCTCAGACCTTGTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAAC
AACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGG
GTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAAAACTTCTTCCCTAAAAACCCATTTCCTCCCTTGCAAAATGGACGCCCGCGCCGGCACCGGAAACAACCACAGAATCCTAGACGCCATTCACCGGCGTA
AACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTC
CAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGCGGCGGCGCCGCCTCCTCAGACCTTGTCCACAACACCGCATCCGG
CGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACG
ACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGAAAATATCGA
TATATAATGTGTGAGATCTTTGTATCTCTTCAATTGTTGCTTCCATTTTTTTATAAGCTTTTTATTATATAAAATAATATATATATATATATTTGTATATTAATTAGGGA
GTTAATTGTTAAAAAATATAAAGGTCTTAAATTTATGAACACATCTATACCATAATAAAAGGATGTTTGAATAAAAGAATGCGTATGAATTCTCTATTTTGATTTTACAT
ACTATATCTCATTATGCTGAGTATTGTTTTTCTTAATATTTGATTGTGACTTTCCATCACATTTTAAGATGGAGATAGATTAATTAATTATTTATCCTATATAAAATATG
TTAAATTTTGAAAAGAATACATGAGTGCACTCCTCTGATGAACCCATTTTAACAGACCTGACTTTATTACACACAAAAATTATATGTTCTAAAAAAGAAGTAAGAAGTAC
TTGGCGCACAAC
Protein sequenceShow/hide protein sequence
MDARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNN
NPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR