; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G05110 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G05110
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionexosome complex component RRP4 homolog
Genome locationClcChr04:17710630..17714383
RNA-Seq ExpressionClc04G05110
SyntenyClc04G05110
Gene Ontology termsGO:0000178 - exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606437.1 Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia]5.0e-16892.05Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG+FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

XP_022995373.1 exosome complex component RRP4 homolog [Cucurbita maxima]4.3e-16791.74Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG+FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

XP_023533481.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo]1.9e-16791.74Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSL IS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

XP_038882864.1 exosome complex component RRP4 homolog isoform X1 [Benincasa hispida]1.8e-17094.5Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQISLNHTQKIRLQRA+E+LESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEV+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ+LTV  YLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMMI+DQ+N SEQKG KFEGTF NQVQ+RVYTPL TRQNICRTANAIRVLSILGFI+TVEV+MEIVSLSISMNIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKEVERR+ SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

XP_038882865.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida]1.8e-17094.5Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQISLNHTQKIRLQRA+E+LESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEV+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ+LTV  YLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMMI+DQ+N SEQKG KFEGTF NQVQ+RVYTPL TRQNICRTANAIRVLSILGFI+TVEV+MEIVSLSISMNIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKEVERR+ SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

TrEMBL top hitse value%identityAlignment
A0A1S3B5H2 exosome complex component RRP4 homolog isoform X14.9e-16190.52Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLNHTQKIRL+RA+E+L+SLSSK NSDASV+VADTIPLNYEDGVLKGHGTLDLNGEVVA+ICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ+L VSPYL+KRRKQHFHHL+
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDPKED MIED V+  EQK  KFEGT    VQE VYTPL TRQNICRTANAIRVLS LGFI+TVEV+MEIV+LSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKEVERRS SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

A0A6J1EXY1 exosome complex component RRP4 homolog4.6e-16792Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG+FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKK
        HEMLGSEFCVLTAEKE ERR+ SKK
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKK

A0A6J1HGD9 exosome complex component RRP4 homolog isoform X11.3e-16692.66Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQISLN TQKIRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRL+INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLI GCNGFIWIGEHVDP EDMMIEDQVN SEQKGSKFEGTFGNQVQERVYTPL TRQNICRTANAIRVLS LGFI+TVEV+ME VSLS S+NI+V
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

A0A6J1HVC7 exosome complex component RRP4 homolog isoform X13.4e-16290.52Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQISLN TQ+IRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDLNGEVVATICGVVER+NKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRL+INYSQDAVLMLSSMNLPDGIQRR+TA DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGK+ERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLI GCNGFI IGE VDP EDMMIEDQVN SEQKGSKFEGTFGNQVQERVYTPL TRQNICRTANAIRVLS LGFI+TVEV+ME VSLS+S+NI+V
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

A0A6J1K7S0 exosome complex component RRP4 homolog2.1e-16791.74Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG+FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCVLTAEKEVERRSLSKKRG
        HEMLGSEFCVLTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCVLTAEKEVERRSLSKKRG

SwissProt top hitse value%identityAlignment
Q09704 Exosome complex component rrp47.3e-4541.63Show/hide
Query:  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEEND
        ++GHGT   +G + A++ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++DI   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D
Subjt:  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEEND

Query:  VICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQ
        ++ AEV+    DG + +  RS KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H + +        V+I+  +    E  + N+
Subjt:  VICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQ

Query:  VQE-RVYTPLT-TRQNICRTANAIRVL-----SILGFIITVEVVMEIVSLSISMNID
          E   YT L  +R +IC    A R L     SI  F  +  V   +  L++  N+D
Subjt:  VQE-RVYTPLT-TRQNICRTANAIRVL-----SILGFIITVEVVMEIVSLSISMNID

Q13868 Exosome complex component RRP48.7e-4649.53Show/hide
Query:  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL  AR+ L     +      V+  DTI    + G ++GHGT     +++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWIGEHVDPKED
        GFIWI    + KE+
Subjt:  GFIWIGEHVDPKED

Q2KID0 Exosome complex component RRP41.0e-4649.53Show/hide
Query:  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL  AR+ L     + +    V+  DTI    + G ++GHGT     +++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWIGEHVDPKED
        GFIW+    + KED
Subjt:  GFIWIGEHVDPKED

Q8VBV3 Exosome complex component RRP41.7e-4650.23Show/hide
Query:  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL +AR+ L     + +    V+  DTI    + G ++GHGT     +++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWI---GEHVD
        GFIWI    EH D
Subjt:  GFIWI---GEHVD

Q9ZVT7 Exosome complex component RRP4 homolog8.5e-11865.75Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQ+ L+ TQK+R +RA E+L+SLSS ANSDASVIV D+IP+N++D  LKGHGT +++GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV 
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHL
        EVA KRWR+++N++QD VLMLSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+GQ+L V PYLVKR K HFH++
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID
        E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ +  E   S   G      +E+ + PL TRQ ICR  NAIRVLS LGF +T+EV+ME V+LS S NID
Subjt:  EQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID

Query:  VHEMLGSEFCVLTAEKEVERRSLSKKR
        +H+MLGSEF V+ AE E ERR   +K+
Subjt:  VHEMLGSEFCVLTAEKEVERRSLSKKR

Arabidopsis top hitse value%identityAlignment
AT1G03360.1 ribosomal RNA processing 46.0e-11965.75Show/hide
Query:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQ+ L+ TQK+R +RA E+L+SLSS ANSDASVIV D+IP+N++D  LKGHGT +++GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV 
Subjt:  MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHL
        EVA KRWR+++N++QD VLMLSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+GQ+L V PYLVKR K HFH++
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID
        E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ +  E   S   G      +E+ + PL TRQ ICR  NAIRVLS LGF +T+EV+ME V+LS S NID
Subjt:  EQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID

Query:  VHEMLGSEFCVLTAEKEVERRSLSKKR
        +H+MLGSEF V+ AE E ERR   +K+
Subjt:  VHEMLGSEFCVLTAEKEVERRSLSKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTTCAAAGAGCCCGAGAAAAACTCGAATCTCTCTCATCGAAGGCCAATTCTGATGCTTCTGTTAT
AGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAG
TCAATAAGCTTATCTATGTACGCGCCTTACGTGCCAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTTGCTCCTAAACGTTGGAGATTGGAT
ATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGA
AGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGATGCTCACAG
TTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTT
GATCCCAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCC
ATTAACAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTCGTAATGGAGATAGTTAGTCTAAGTA
TTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGTGTTCTCACGGCGGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAGAGGGGGTGA
mRNA sequenceShow/hide mRNA sequence
TATTATTTTTCATTTAAGAATGCTTTGAAAGAAAATGAATCTTGAAGCTTGATATGGGACTTGCTTATTGAGTATTTTTGTACTCAATGTCACTTCTCCAAAATGCTTTT
AGATGAAGGATCAGGTAAAAGTTTTCAAAATAGTGAAGTTTGGTGTTTTGGCACAAGGCATCGAAAGATGTTTTTTTAGGATTTGATAGTTTGACTTAGAAATTGTTTGT
AATAAGTTGCCTATGGTGATTTGTATACGTTATAAAGGTTTATAATTGATATGTTCTGCATTACAATTTTAATGGCTATATTGGAAAATACAGGTTGTTTCACCTTTTTT
TTTTTTTGGAATCACGTGCCATATCTTTGCAAATATTTTGTTATAATATGTCTATATTGGTGATGAGCATCATGCAGCACCCCTATGTACTAACGTAGAAATTTTCTAAA
TTCAGATATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTTCAAAGAGCCCGAGAAAAACTCGAATCTCTCTCATCGAAGGCCAATTCTGATGCTT
CTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTT
GAGCGAGTCAATAAGCTTATCTATGTACGCGCCTTACGTGCCAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTTGCTCCTAAACGTTGGAG
ATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCA
TTTTTGAAGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGATG
CTCACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGA
GCATGTTGATCCCAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGTAT
ATACTCCATTAACAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTCGTAATGGAGATAGTTAGT
CTAAGTATTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGTGTTCTCACGGCGGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAGAGGGGGTG
ATGGTTTTGTAGAATTTTAGATTACCACCACTTGGTCTCTGTAGTATTAACAGTTTAGAATGCAATATTTGCTTAATTATTCTATAGTACGTGGTTTCATAAATGTCGAA
GAATTACTTTTAGGATTTTACTATGTCATATTATTGGTTTAGATTAGTACTTGACGAAACATAACTTTATTAAATGTAATATTTCTGCTGATGATTGTATCTTTATCATG
CATCTTCATTGCTTGAAGGCAATTTTATGGTTTTTGATTGCTTGCC
Protein sequenceShow/hide protein sequence
MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD
INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV
DPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDVHEMLGSEFCVLTAEKEVERRSLSKKRG