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Clc04G05610 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G05610
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr04:18309686..18320668
RNA-Seq ExpressionClc04G05610
SyntenyClc04G05610
Gene Ontology termsGO:0006418 - tRNA aminoacylation for protein translation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0065007 - biological regulation (biological process)
GO:0005622 - intracellular (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004812 - aminoacyl-tRNA ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050511.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0559.09Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQLKK +G+ + VQ+ TP +++  EW+T P EVYGYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
KAA0056024.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]7.2e-0663.64Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQL KVIG+HQ V   TP +S+  EWV +P EV+GYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
TYK06572.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0559.09Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQLKK +G+ + VQ+ TP +++  EW+T P EVYGYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
TYK24654.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0559.09Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQLKK +G+ + VQ+ TP +++  EW+T P EVYGYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
TYK27711.1 DNA gyrase subunit A [Cucumis melo var. makuwa]7.2e-0663.64Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQL KVIG+HQ V   TP +S+  EWV +P EV+GYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
TrEMBL top hitse value%identityAlignment
A0A5A7UAE4 Ty3/gypsy retrotransposon protein1.0e-0559.09Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQLKK +G+ + VQ+ TP +++  EW+T P EVYGYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
A0A5A7ULF8 Putative retroelement pol polyprotein3.5e-0663.64Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQL KVIG+HQ V   TP +S+  EWV +P EV+GYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
A0A5D3C5N7 Ty3/gypsy retrotransposon protein1.0e-0559.09Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQLKK +G+ + VQ+ TP +++  EW+T P EVYGYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
A0A5D3DM31 Ty3/gypsy retrotransposon protein1.0e-0559.09Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQLKK +G+ + VQ+ TP +++  EW+T P EVYGYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
A0A5D3DVK3 DNA gyrase subunit A3.5e-0663.64Show/hide
Query:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
        +FHVSQL KVIG+HQ V   TP +S+  EWV +P EV+GYRKNP
Subjt:  IFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLP-EVYGYRKNP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATATGGTGAAGGTTCTCACTCACTGGGAGATGAACTCATAATGCGTTGGCACCATTTGTACAGAGCTTTCGCCTCTTCAACTCGTTTCTCTCAAGAAAGGAGAAG
CTTTGGCCTATTTATAGGTTTCGAAAAGGTAATAACTTTCAATTCTTTTAAGATTTTCTCCACAGGGGTCTCACCTTTCCAGGCTGTATATGGCTTACCTTCTCATATCT
TCCATGTTTCTCAATTGAAGAAGGTGATAGGACAACACCAGGTTGTGCAGACCACGACTCCGAATCTATCTAAAATGTTTGAATGGGTGACTTTGCCTGAAGTTTATGGT
TACCGCAAGAATCCTTTCTTGAAAAGGATTGCCATTGCCTACACATAA
mRNA sequenceShow/hide mRNA sequence
CCCCCTTTCTTCCGTCGTCCTGGATTCACTTCAAAAATTTCCAAGCAAATAACAAATTTTCTAAAATTTTCTCTCCCATTTTGTATTTTCATCATAATTTCTTCAATATC
TTTCTTCTAATGTTGTTAATCCTTTTCGTTGTTTAGATTTGGGGGGGAAAAAATGAAACTGGAAATGGTTTTGGATTCTGCCTAGCCTTTCGAATAACCAGAAGGTGCAA
ATTATTCTTCAACACCGTTTGGTTCAGACAAAGGCTTACATCAATTGATCGGATTATATAATATTATTCCGTCGCCGAATCCGTTTGAGGGAGTCGAACGCTTTTTTCTT
TCGTTCCTCTCCTAGATAGATTCGGATATTTCTCCTCCTACCCCCACATCCTTTTGTTTTATTTTTTTAGCTCTTTTGATAAGGAATCTGATCTGGGTTTTGTTAGCCTT
TTCGAATATTGGATGTTCTTTCTTTTTAGGTGAATCATGGAATGTTGGACGTAGGTTTAGATTCTGTTGTGAGCGTTTAAGACTGAATAGTGATTAAACAAAGCTTTGTA
GATTAGTGAAAATGATATTCTGCATTTGGATTTTGGTCTAGGAATCTGATCGTCTTTGGCAATCTGATTGTGAAATAATGGGGTTGATTACGTAAATGAGTTGCATTGTT
TGATGTTCAAGGCAATGTATTTTGTCAATAATGCAAATAGCGTAGCTACGGTGTATTGTTAAGTTGTCAAACCATGGTTTGATATTTTGTGGCTAGTTGAAATCCCACCA
TTGATCTTTCACTTTCTAAAGTGGGTCATGACTCATGAATCTCTTTCCCTTTCATTGGACTCCAGATTTCTTCCCTTCTTTAGTTTTCCTCTACTGAATTATTTGATTTG
ATCAATTTCGGATTATTGTTTACTGTTCAAATCCAGAAAAAGGAATAGAAAGAGAATTCTGTTCCAGATTTTTCTTGCTCCATAATTCAGTGGGTCGCTCTCTCAATTTA
ATTTCATTATTAGAGAATTCTCTTCCAGATTTTTCTTGCTCCATTATTCAGTGGGTCGCTCTCTCAATTTAATTTCATTATTTTGTCCTGAAACTTACTTGCATCCGTGG
TTTTTGCCTTGCACGTAACCGATTTTAATTAGTGGGAGAATAAAGCAATTGGTTGAACACTCTAACAACTCATAAAGAAGATGGGAAAGGGATAACAAAAGCTGCATCTT
CATTGCCTGTTAGCATGATTCAACTTGGTAGTAATTCGATCTTTCCAGAGAATCTGCAGTCCTGTAATTGGTTTTCTTTTCGTTTCTAAAAGATGGAAATTGCTCATTTG
ATTGAGGTTTTCCAGTCAGTTAGGAATCAAAGAAAAAGGATTTAGAAGGTTAATTAGGATTAAGGGATATAAACAAGATGTGCAAAGGGATAATAAAAGCAATATCTTTC
TTGCCTAGTAGCTAAATTCAACTTGGCATTAATTCGATCTTCTTTCCCAGGGCAAGTACCCTTATGTTCAAGAGAATCTCTGGTCCTGTAATTGACTTTCTTTTTGGTTC
TAAAAGATGGAAATTGCTCTTTTGATTGAGGTGTTTCCAGTCAGTCAGGAATCAAAGAAAAAGGGTTCGAAGGTAAATTAAGATTCAAGGCATTCTTTAATGCTAAAGGC
TTATAAGTTGGTTACATTAATTGGAGTAAGACAAAAGCTATAATGTAGAGACCTTGTCAGAGGAGTTCTTGTACAGACTAAAATGGTGTTCTAACCATTAAATATTGAGG
CTTCAATATGTTTTGCTAAAATAATCTCTTTCAGTTCCACAATGTATTGTGTAAATAGTGTACCACTTCTCCAGACTGACCATTATGAAAGACAATAAAACCATACAAGG
GTTTAAGATTCATAGTTGAACAACACGCAGTATTGGCATAAACAATTCAGGTAGGGATCCATCCAATATAATCCAAGTAGGATTCATGAACCTATTTTTGTTCTTGAAGA
TATAATCTCTATGTATAGACATGGTAAACTTTGCATAAAATGATAGAACTGGGCCTTGGCAAATCCACCTCAATTCATCCCCTAGCGTCAAGAGTCTGTCTTCAAGGCAA
AGCCAACTCTTAGCTCCCTTAGAGCCCATCATAGTGGCCACCACAGGTTATGTGAGCTCTTGTTTGTGGAAGCCCTCTTGCTGCTGAGATCGCTTCATTTAATCTTGTAG
CTTGCTGAACTGCTTTCTTTAATTTCTGCAACCAAATGCTATGAAATAAGCTTTGCTGCAGTTTATGTGTTATATGGACTGAACATTTTCACTTAATTCCCAAGAAAATT
TTGTTTATTCATCACTGTCAAAGGTGATTTTACATAAAAGTTTTGAATTGCTGACCTTATCATGGGTATAGATCTGGATTCTCAGCTTGTGTTGGTTACCTCCATAAAAC
AGAATACAAATAGTTGCAGCTGCAACTCCAAAGGAACAAATGGCTCCAATCCCATTTAAACTCCACTTTAATATGTTTAACCCACCCATGGATCCATCCCAATTCATCTC
ATCTTTGTTGGCAGTGGCACCACTTTCTTTGTTGCTTTTCTGGCTCATCAAGTTCATTCTAGGGGAGCTTGTAATGTTCTCCTTTGCCTCACCCTCATCATCAAACTGAT
AATGCCCTACATCCATTTGAGGCTTTGTTCCTTTGTTACTGGATCTTGGTGAGTCTATTTTCATGTCGACGAATTCATTTTCCTTCATTTTCTTGAAGAAAACTTGAGTA
ACAGTGTCTTGATCTGCTTCCACAGCTCCTTTCTGATCCTTCTCGCTCATGGCTGGTGGCACAACAGTGATCACCATGGACTTCTTATTTTTTTCTTTCAGTGCCAGTGA
ATTATCATCTGGGATTTTGACAATTGGTGAATCCAATTGAAGATGAACAGGAATCGGCTGTTTAGCCAATCTTGAAGAAGACCCTGGCTGTTGGCTGATGTGTTTGGAAT
CCATTGATGGACACAGGAAGTGGTTCATATCGAATACAATCTTTGCATCAGAAGCTGAAACGATCTTCTTCTGATCATCTTTGTAACCAAGCAACCCATCATCAGAGAGG
ATTTCCCATTCATGGAGGTCCATTTTTTTGCCTGGAAGAACTTAGATGATAATGATGAGAAATAAAAGAAAGTCACAAGAGGGGGACTTTATATGAAAGAAGACTCAAAA
TTTAGAACTTTTTTTGGATGAAGTTCTGCAGAAGTGCTTTGGCCAAAAGCCCTCTGCAGTCTATGGTGTCTTGTAGCTCTTGGACAGGGGACTGCCAAAAGCAAAAGGAT
TTGAAGTTGTTTTGAGTGCTTATCCTTCTTATTTCTCTCAAACAGTAATGACAAAAGGGTTGATGGGGTCAGTAGGGACCCACCAAGAACTCAAATGATAAACCCTCTTG
GATTCTAGCTTTCCTTGTGAATACATTTTCATCCAGTTCAAAGGGAAAAAAGATGAAGAGAAGAAATTCTTTCTGAAGATGCTTTGTTTAGGGAAAAATAAAAAAAATAA
TAAAAATCTTGAGAATGAAAGATGAGAGGATATGATGATTTATTGACTATGGTAGGTGAATTTTTTTGGGTGATTCTAACAAGTCACAGCCTCACAGGAATGGAACCGAA
AAACTATTAAAAAAGTGTGTCGGTTGCTTGCTGGGATTGTCTAGAAACGATAAGGAAAGGATAAGTGTTATTTTTTTTCTTTCTTTTTTAACTTTTAAGAAGGAAAAGGA
AAGTTAAAGGTTATTTGTAAATGCAGCTGTCCATACCTAAGAATCTTCTCGTTGACATTACCTAGAAAGGGTGAGAGCTTACAAAGCTATGCCATTAACAGAATGAGGGA
AATGAAGATAGAACATAAATGGCATATGGTGAAGGTTCTCACTCACTGGGAGATGAACTCATAATGCGTTGGCACCATTTGTACAGAGCTTTCGCCTCTTCAACTCGTTT
CTCTCAAGAAAGGAGAAGCTTTGGCCTATTTATAGGTTTCGAAAAGGTAATAACTTTCAATTCTTTTAAGATTTTCTCCACAGGGGTCTCACCTTTCCAGGCTGTATATG
GCTTACCTTCTCATATCTTCCATGTTTCTCAATTGAAGAAGGTGATAGGACAACACCAGGTTGTGCAGACCACGACTCCGAATCTATCTAAAATGTTTGAATGGGTGACT
TTGCCTGAAGTTTATGGTTACCGCAAGAATCCTTTCTTGAAAAGGATTGCCATTGCCTACACATAA
Protein sequenceShow/hide protein sequence
MAYGEGSHSLGDELIMRWHHLYRAFASSTRFSQERRSFGLFIGFEKVITFNSFKIFSTGVSPFQAVYGLPSHIFHVSQLKKVIGQHQVVQTTTPNLSKMFEWVTLPEVYG
YRKNPFLKRIAIAYT