; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G05890 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G05890
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProteasome subunit beta
Genome locationClcChr04:18625231..18627476
RNA-Seq ExpressionClc04G05890
SyntenyClc04G05890
Gene Ontology termsGO:0051603 - proteolysis involved in cellular protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005839 - proteasome core complex (cellular component)
GO:0004298 - threonine-type endopeptidase activity (molecular function)
InterPro domainsIPR001353 - Proteasome, subunit alpha/beta
IPR029055 - Nucleophile aminohydrolases, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7806876.1 Proteasome subunit beta type-2-A [Senna tora]1.7e-1787.04Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNILLAGYD +TGPSLYYIDYIA LHKVEKGAFGYGSYFSLSMMD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

XP_012069674.1 proteasome subunit beta type-2-A [Jatropha curcas]7.5e-1887.04Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNILLAGYDN+TGPSLYYIDYIA LHKV+KGAFGYGSYFSLSMMD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

XP_023539479.1 proteasome subunit beta type-2-A-like [Cucurbita pepo subsp. pepo]1.7e-1787.04Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNILLAGYD QTGPSLYYIDYIA LHKVEKGAFGYGSYFSL+MMD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

XP_030488508.1 proteasome subunit beta type-2-B [Cannabis sativa]1.7e-1787.04Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNILLAGYD +TGPSLYYIDYIA LHKVEKGAFGYGSYFSLSMMD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

XP_030488509.1 proteasome subunit beta type-2-B [Cannabis sativa]1.7e-1787.04Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNILLAGYD +TGPSLYYIDYIA LHKVEKGAFGYGSYFSLSMMD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

TrEMBL top hitse value%identityAlignment
A0A067KVK4 Proteasome subunit beta3.6e-1887.04Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNILLAGYDN+TGPSLYYIDYIA LHKV+KGAFGYGSYFSLSMMD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

A0A6J1CE80 Proteasome subunit beta8.0e-1887.04Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNILLAGYD +TGPSLYYIDYIA LHKVEKGAFGYGSYFSLSMMD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

A0A6J1KYM9 Proteasome subunit beta1.0e-1785.19Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVN+LLAGYD +TGPSLYYIDYIA LHKVEKGAFGYGSYFSLSMMD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

A0A7J6FP32 Uncharacterized protein8.0e-1890.2Show/hide
Query:  LFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        + NPYSVNILLAGYD +TGPSLYYIDYIA LHKVEKGAFGYGSYFSLSMMD
Subjt:  LFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

A0A7J6HWS7 Uncharacterized protein8.0e-1890.2Show/hide
Query:  LFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        + NPYSVNILLAGYD +TGPSLYYIDYIA LHKVEKGAFGYGSYFSLSMMD
Subjt:  LFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

SwissProt top hitse value%identityAlignment
O23714 Proteasome subunit beta type-2-A7.7e-1877.78Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNIL+AGYD+++G SLYYIDYIA LHKV+KGAFGYGSYFSLS MD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

O24633 Proteasome subunit beta type-2-B1.3e-1777.78Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNIL+AGYD + G SLYYIDYIA LHKV+KGAFGYGSYFSLS MD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

P49721 Proteasome subunit beta type-21.7e-0956.25Show/hide
Query:  PYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        PY VN+LLAGYD   GP+LYY+DY+A L K    A GYG++ +LS++D
Subjt:  PYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

Q5E9K0 Proteasome subunit beta type-21.7e-0956.25Show/hide
Query:  PYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        PY VN+LLAGYD   GP+LYY+DY+A L K    A GYG++ +LS++D
Subjt:  PYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

Q9LST6 Proteasome subunit beta type-21.9e-1672.22Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPY VN+LLAGYD+  G SLYYIDYIA  HK+EKGAFGYGSYF LS+MD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

Arabidopsis top hitse value%identityAlignment
AT3G22630.1 20S proteasome beta subunit D15.5e-1977.78Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNIL+AGYD+++G SLYYIDYIA LHKV+KGAFGYGSYFSLS MD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

AT4G14800.1 20S proteasome beta subunit D29.4e-1977.78Show/hide
Query:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        ++L  NPYSVNIL+AGYD + G SLYYIDYIA LHKV+KGAFGYGSYFSLS MD
Subjt:  SSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD

AT4G14800.2 20S proteasome beta subunit D26.5e-2064.38Show/hide
Query:  DLATSRLPPFASPFSS-----LLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD
        +LAT+    F + F       +L NPYSVNIL+AGYD + G SLYYIDYIA LHKV+KGAFGYGSYFSLS MD
Subjt:  DLATSRLPPFASPFSS-----LLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCCTTTTATAGACTTCCAAGGGGATATCGCATCCAGCTCTCACCGCTCTCGTCTGGTCCAGATCTCGCCACCGGTGGATATTTTGGGGAGAGAAAGAGTAGCAGA
GCAGCAGGAGCAGGACCTCGCTACTTCTCGGCTGCCTCCTTTTGCTTCGCCATTTTCAAGTTTGCTGTTTAATCCATACTCTGTTAATATCCTCTTGGCTGGCTATGACA
ACCAGACTGGCCCATCACTTTACTACATCGATTACATTGCAATGCTTCACAAGGTTGAGAAAGGTGCTTTTGGTTACGGATCCTACTTTTCACTCTCTATGATGGATATT
AGGGTCTGTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGCCTTTTATAGACTTCCAAGGGGATATCGCATCCAGCTCTCACCGCTCTCGTCTGGTCCAGATCTCGCCACCGGTGGATATTTTGGGGAGAGAAAGAGTAGCAGA
GCAGCAGGAGCAGGACCTCGCTACTTCTCGGCTGCCTCCTTTTGCTTCGCCATTTTCAAGTTTGCTGTTTAATCCATACTCTGTTAATATCCTCTTGGCTGGCTATGACA
ACCAGACTGGCCCATCACTTTACTACATCGATTACATTGCAATGCTTCACAAGGTTGAGAAAGGTGCTTTTGGTTACGGATCCTACTTTTCACTCTCTATGATGGATATT
AGGGTCTGTTACTAA
Protein sequenceShow/hide protein sequence
MTPFIDFQGDIASSSHRSRLVQISPPVDILGRERVAEQQEQDLATSRLPPFASPFSSLLFNPYSVNILLAGYDNQTGPSLYYIDYIAMLHKVEKGAFGYGSYFSLSMMDI
RVCY