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Clc04G05990 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G05990
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S28
Genome locationClcChr04:18753767..18766754
RNA-Seq ExpressionClc04G05990
SyntenyClc04G05990
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0006869 - lipid transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0005319 - lipid transporter activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT96490.1 hypothetical protein VIGAN_08344000, partial [Vigna angularis var. angularis]1.1e-2472.34Show/hide
Query:  GSECDILSCRANPSRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        G    +L C       AA  +SS FF+ +   MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREAR
Subjt:  GSECDILSCRANPSRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

KAG6595421.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]8.9e-3092.59Show/hide
Query:  SRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        S +AAQ+SSSI F LLLSGMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  SRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

KAG6603304.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]8.6e-2592.75Show/hide
Query:  SGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSPKHE
        +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARS  +E
Subjt:  SGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSPKHE

KAG7027430.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2478.02Show/hide
Query:  NPSRIAAQSSSSIFFILLLS--------GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        NPS I+     + FF  L S        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  NPSRIAAQSSSSIFFILLLS--------GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

KAG7033582.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-3190.59Show/hide
Query:  RANPSRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +  PS  AAQS SSIFF+LLLSGMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  RANPSRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

TrEMBL top hitse value%identityAlignment
A0A0S3SUH5 Uncharacterized protein (Fragment)5.5e-2572.34Show/hide
Query:  GSECDILSCRANPSRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        G    +L C       AA  +SS FF+ +   MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREAR
Subjt:  GSECDILSCRANPSRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A5N6QPB7 Uncharacterized protein1.6e-2487.32Show/hide
Query:  IFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +F + +L  MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREAR
Subjt:  IFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A6J1C0B5 40S ribosomal protein S28-1-like2.7e-2492.65Show/hide
Query:  ILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        ++  S MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  ILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A6J1E226 40S ribosomal protein S28-1-like isoform X27.1e-2598.44Show/hide
Query:  SGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  SGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A6J1E336 40S ribosomal protein S28-1-like isoform X17.1e-2598.44Show/hide
Query:  SGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  SGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-27.1e-2288.71Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

P46302 40S ribosomal protein S281.1e-2290.32Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q6PBK3 40S ribosomal protein S281.4e-1779.31Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q90YP3 40S ribosomal protein S281.4e-1779.31Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q9SR73 40S ribosomal protein S28-11.9e-2291.94Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.3e-2391.94Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.3e-2391.94Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

AT5G64140.1 ribosomal protein S285.0e-2388.71Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTGCAGCTTCGCTTCTTCTCCAAAATGTTAGTGCAACTTTGCCTCCTCTTCAAACTGTTGGTGCGGCTTCGCTCCCTCTCTAAAATATTGGTGCAACTTTACTC
TTCCTCTGAAATGCTAGTGCAGCTTCGCTCCTCCTCAATATTGGTGCAACTCCACTTTGTCTTCAAGTTCAAGATCGGTGTGGTCGATTCCACTCCAAGTCAAGTTCAAA
ATTTGCGTGCCCAACATGAGCGCACCAGCATGCCCAACATGTCTGCAAAGAGAAGACTCATAGTCGTTGGAGTTGGAGTGCACCAACGTGCCCAACATATCTGCAAGGAG
AAGACTCATCATCATTGGAGTTGGTACGCTAACTTCACGACAAATGATGGTTCAGAGTGTGACATCCTAAGTTGCCGAGCCAATCCCTCCCGCATTGCCGCACAATCTTC
TTCCTCGATCTTCTTCATTCTCTTGCTCTCAGGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAG
TGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACACTACTCGAGTCCGAGAGGGAGGCTAGA
AGCCCTAAGCATGAAATTAGAGAGCCTAAACAGGGTGAATTTGCTACCAAAACAGGGCAAAGTATTAGTGAAGAGTTGGAGGTCGCTCGAGATCCCGAGCCACACACGCA
CGCAGCACAGGCGTACGCACAGGCCCGGTGTGGCAACTCTTGCACATGGGCACGCGCTCTAGGAGTCAATCACACACATGGTACTCGGCGTCGAGCGTCCCTTTTTGGCT
TACTGGGCGTCAATCGTGTGTTTGGGCTGGGCATCTTGCTGCGCAACGTCAAATGGCCTGACACTCAGGCTGTGCATGCCACACTACCCTCGCTCGCCTACGTTACTTGC
AGCTTATCCGCCCCTGCCTGCCCTCGTAGGTGTACAGAACCCTTCACTAACCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTGCAGCTTCGCTTCTTCTCCAAAATGTTAGTGCAACTTTGCCTCCTCTTCAAACTGTTGGTGCGGCTTCGCTCCCTCTCTAAAATATTGGTGCAACTTTACTC
TTCCTCTGAAATGCTAGTGCAGCTTCGCTCCTCCTCAATATTGGTGCAACTCCACTTTGTCTTCAAGTTCAAGATCGGTGTGGTCGATTCCACTCCAAGTCAAGTTCAAA
ATTTGCGTGCCCAACATGAGCGCACCAGCATGCCCAACATGTCTGCAAAGAGAAGACTCATAGTCGTTGGAGTTGGAGTGCACCAACGTGCCCAACATATCTGCAAGGAG
AAGACTCATCATCATTGGAGTTGGTACGCTAACTTCACGACAAATGATGGTTCAGAGTGTGACATCCTAAGTTGCCGAGCCAATCCCTCCCGCATTGCCGCACAATCTTC
TTCCTCGATCTTCTTCATTCTCTTGCTCTCAGGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAG
TGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACACTACTCGAGTCCGAGAGGGAGGCTAGA
AGCCCTAAGCATGAAATTAGAGAGCCTAAACAGGGTGAATTTGCTACCAAAACAGGGCAAAGTATTAGTGAAGAGTTGGAGGTCGCTCGAGATCCCGAGCCACACACGCA
CGCAGCACAGGCGTACGCACAGGCCCGGTGTGGCAACTCTTGCACATGGGCACGCGCTCTAGGAGTCAATCACACACATGGTACTCGGCGTCGAGCGTCCCTTTTTGGCT
TACTGGGCGTCAATCGTGTGTTTGGGCTGGGCATCTTGCTGCGCAACGTCAAATGGCCTGACACTCAGGCTGTGCATGCCACACTACCCTCGCTCGCCTACGTTACTTGC
AGCTTATCCGCCCCTGCCTGCCCTCGTAGGTGTACAGAACCCTTCACTAACCTCTAA
Protein sequenceShow/hide protein sequence
MLVQLRFFSKMLVQLCLLFKLLVRLRSLSKILVQLYSSSEMLVQLRSSSILVQLHFVFKFKIGVVDSTPSQVQNLRAQHERTSMPNMSAKRRLIVVGVGVHQRAQHICKE
KTHHHWSWYANFTTNDGSECDILSCRANPSRIAAQSSSSIFFILLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
SPKHEIREPKQGEFATKTGQSISEELEVARDPEPHTHAAQAYAQARCGNSCTWARALGVNHTHGTRRRASLFGLLGVNRVFGLGILLRNVKWPDTQAVHATLPSLAYVTC
SLSAPACPRRCTEPFTNL