CuGenDBv2

Gene ID	Clc04G06150
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	R3H domain-containing protein 1-like isoform X1
Genome location	ClcChr04:19130966..19133997
RNA-Seq Expression	Clc04G06150
Synteny	Clc04G06150
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR024771 - SUZ domain IPR036867 - R3H domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KGN54887.2 hypothetical protein Csa_012257 [Cucumis sativus]

5.7e-131

76.99

Show/hide

Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSS SSIDA PD LKDK S VDPFL+EALHNPRHRLTILRME DIQRFLQNQ+ Q                              DNGIDGQGRILV+
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PT+CLSQIPAKQ +DDKPGHVKIAIRPRP+K SD+AGN MAK+S  R+VEQRKEEYDKARARIFSSQGS   V+VL H   EGL I PNRDR 
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVNDVEKYTS  DAGNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNI P FT YHVPRNEVSLGYVSPSPIKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQAPL
        VSR SANV WPCAGMPY HTAFQ  L
Subjt:  VSRTSANVLWPCAGMPYTHTAFQAPL

TYK22607.1 R3H domain-containing protein 1-like isoform X1 [Cucumis melo var. makuwa]

5.4e-129

76.78

Show/hide

Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSSAS IDAFPD LKDK S+VDPFL+E LHNPRHRLTILRME DIQRFLQNQE Q                              DNGIDGQGRILV+
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PT+CLSQIPAKQ +DDKPGHVKIA+RP+P+K SDDAGN MAK+S GR+VEQRKEEYDKARARIFSSQ S+ SVDVLSH  TEGL I PNRDRA
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVNDVEKY S  DAGNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPSLNF PFT QNI P FT YHVPRNEV LGYVSPS IKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQ
        +SR+SANV WPCAGMPY H+AFQ
Subjt:  VSRTSANVLWPCAGMPYTHTAFQ

XP_008455743.1 PREDICTED: R3H domain-containing protein 1-like isoform X1 [Cucumis melo]

6.3e-138

77.58

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Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSSAS IDAFPD LKDK S+VDPFL+E LHNPRHRLTILRME DIQRFLQNQE Q                              DNGIDGQGRILV+
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PT+CLSQIPAKQ +DDKPGHVKIA+RP+P+K SDDAGN MAK+S GR+VEQRKEEYDKARARIFSSQ S+ SVDVLSH  TEGL I PNRDRA
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVNDVEKY S  DAGNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPSLNF PFT QNI P FT YHVPRNEV LGYVSPS IKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN
        +SR+SANV WPCAGMPY H+AFQAPLYQQSLSFDY QYN
Subjt:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN

XP_011653850.1 uncharacterized protein LOC101216736 [Cucumis sativus]

2.0e-139

78.17

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Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSS SSIDA PD LKDK S VDPFL+EALHNPRHRLTILRME DIQRFLQNQ+ Q                              DNGIDGQGRILV+
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PT+CLSQIPAKQ +DDKPGHVKIAIRPRP+K SD+AGN MAK+S  R+VEQRKEEYDKARARIFSSQGS   V+VL H   EGL I PNRDR 
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVNDVEKYTS  DAGNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNI P FT YHVPRNEVSLGYVSPSPIKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN
        VSR SANV WPCAGMPY HTAFQAPLYQQSLSFDY QYN
Subjt:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN

XP_038883354.1 R3H domain-containing protein 1-like [Benincasa hispida]

6.8e-140

79.35

Show/hide

Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSSASSID FPD LKDK S VDPFL+EALHNPRHRLTILRME DIQRFLQNQE Q                              DNGIDGQGRILVR
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PTVCLSQIPAKQS+DDKPG VKIAIRPRP+KSSDDAGN MAK+SLGRSVEQRKEEYDKARARIFSSQGST SVDVLS    E LDISPNRDR 
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVN+VEK TS KD GNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPS+NFAPFT+QN+PP F+ YHVPRNE SL YVSPS IKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN
        VSR SAN  WPCAGMPYTHTAFQAPLY QSLSFDY QYN
Subjt:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L247 Uncharacterized protein

9.5e-140

78.17

Show/hide

Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSS SSIDA PD LKDK S VDPFL+EALHNPRHRLTILRME DIQRFLQNQ+ Q                              DNGIDGQGRILV+
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PT+CLSQIPAKQ +DDKPGHVKIAIRPRP+K SD+AGN MAK+S  R+VEQRKEEYDKARARIFSSQGS   V+VL H   EGL I PNRDR 
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVNDVEKYTS  DAGNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNI P FT YHVPRNEVSLGYVSPSPIKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN
        VSR SANV WPCAGMPY HTAFQAPLYQQSLSFDY QYN
Subjt:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN

A0A1S3C2A6 R3H domain-containing protein 1-like isoform X1

3.1e-138

77.58

Show/hide

Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSSAS IDAFPD LKDK S+VDPFL+E LHNPRHRLTILRME DIQRFLQNQE Q                              DNGIDGQGRILV+
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PT+CLSQIPAKQ +DDKPGHVKIA+RP+P+K SDDAGN MAK+S GR+VEQRKEEYDKARARIFSSQ S+ SVDVLSH  TEGL I PNRDRA
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVNDVEKY S  DAGNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPSLNF PFT QNI P FT YHVPRNEV LGYVSPS IKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN
        +SR+SANV WPCAGMPY H+AFQAPLYQQSLSFDY QYN
Subjt:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN

A0A5A7SJ76 R3H domain-containing protein 1-like isoform X1

3.1e-138

77.58

Show/hide

Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSSAS IDAFPD LKDK S+VDPFL+E LHNPRHRLTILRME DIQRFLQNQE Q                              DNGIDGQGRILV+
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PT+CLSQIPAKQ +DDKPGHVKIA+RP+P+K SDDAGN MAK+S GR+VEQRKEEYDKARARIFSSQ S+ SVDVLSH  TEGL I PNRDRA
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVNDVEKY S  DAGNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPSLNF PFT QNI P FT YHVPRNEV LGYVSPS IKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN
        +SR+SANV WPCAGMPY H+AFQAPLYQQSLSFDY QYN
Subjt:  VSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN

A0A5D3DFX8 R3H domain-containing protein 1-like isoform X1

2.6e-129

76.78

Show/hide

Query:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR
        MDSSSAS IDAFPD LKDK S+VDPFL+E LHNPRHRLTILRME DIQRFLQNQE Q                              DNGIDGQGRILV+
Subjt:  MDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVR

Query:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA
        KTVEAR PT+CLSQIPAKQ +DDKPGHVKIA+RP+P+K SDDAGN MAK+S GR+VEQRKEEYDKARARIFSSQ S+ SVDVLSH  TEGL I PNRDRA
Subjt:  KTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRA

Query:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ
        E CRVNDVEKY S  DAGNGASSRVAIL+DREKDLSDPDYDRSYERYVKSLPINLTPSLNF PFT QNI P FT YHVPRNEV LGYVSPS IKTVGLNQ
Subjt:  EGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQ

Query:  VSRTSANVLWPCAGMPYTHTAFQ
        +SR+SANV WPCAGMPY H+AFQ
Subjt:  VSRTSANVLWPCAGMPYTHTAFQ

A0A6J1DP27 R3H domain-containing protein 1-like isoform X1

3.5e-126

73.77

Show/hide

Query:  DCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVRKTVEARLPTVCLS
        D LKDK SMVDPFLVEAL NPRHRLTILRME DIQ FLQNQE Q                              DN IDGQGRILVRKTVEA+ P +CLS
Subjt:  DCLKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDGQGRILVRKTVEARLPTVCLS

Query:  QIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTS
        QIPAKQS+DD  G VKIA+RPRP+KSSDD    MAK+ LGR+VEQRKEEYDKARARIFSSQGST SVDV SH FTEGLDIS NRDRAEGCRVNDV+KY+S
Subjt:  QIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTS

Query:  AKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQVSRTSANVLWPCA
         KDAG+G +SRVAIL+DREKDLSDPDYDRSY+RYVK+LPIN TPS+NFAPFT+QNI P F  YHVPRN+V L YVSPSPIKTVGLN +SRT+ NV WPCA
Subjt:  AKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYVSPSPIKTVGLNQVSRTSANVLWPCA

Query:  GMPYTHTAFQAPLYQQSLSFDYPQ
        GMPYTHTAFQ PLYQQSLSF+Y Q
Subjt:  GMPYTHTAFQAPLYQQSLSFDYPQ

SwissProt top hits

e value

%identity

Alignment

Q15032 R3H domain-containing protein 1

1.3e-05

26.02

Show/hide

Query:  ISLTVSLEEEEEEEEEEEEEEVKSMDS--SSASSIDAFPDCLKDKFSMVDPFLVEAL-HNPRHRLTILRMEFDIQRFLQNQEHQG---------------
        I LT S E+EE+  ++E E+E K+ D       S D+  +        +  FLV  L +NPR R+ +L++E +I  F+ N E                  
Subjt:  ISLTVSLEEEEEEEEEEEEEEVKSMDS--SSASSIDAFPDCLKDKFSMVDPFLVEAL-HNPRHRLTILRMEFDIQRFLQNQEHQG---------------

Query:  --------DNGIDGQGR-ILVRKTVEARLPTVCLSQIPAKQSSDDK-PGHVKIAIRPRPSKSSDDAGNGMAKR----SLGRSVEQRKEEYDKARARIFSS
                D+ +D  G+ ++V KT   R+P     Q   +   DDK     K  I  R + S D   N M  R       +S+E+R+EEY +AR RIFS 
Subjt:  --------DNGIDGQGR-ILVRKTVEARLPTVCLSQIPAKQSSDDK-PGHVKIAIRPRPSKSSDDAGNGMAKR----SLGRSVEQRKEEYDKARARIFSS

Query:  QGSTSSVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTSAKDAGNGASSRVAILKDRE-KDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPL
            S  + +     +  D S  + R +  RVN   K  S +   +  SS    LK  E +  S  D D S    +++L   +T + +F+  +V      
Subjt:  QGSTSSVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTSAKDAGNGASSRVAILKDRE-KDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPL

Query:  FTSYHVPRNEVSLGYVSPSPIKTVG-LNQVSRTSANVLWPCAGMPYTHTAFQAPLY------QQSLSFD
         T      +  S+G +S +  ++ G +   + + +++  P  G   + ++  AP+         SLSFD
Subjt:  FTSYHVPRNEVSLGYVSPSPIKTVG-LNQVSRTSANVLWPCAGMPYTHTAFQAPLY------QQSLSFD

Arabidopsis top hits

e value

%identity

Alignment

AT2G40960.1 Single-stranded nucleic acid binding R3H protein

8.5e-48

40.41

Show/hide

Query:  LKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDG-QGRILVRKTVEARLPTVCLSQ
        + DK   VDPFLVEAL NPRHRLTILRME D+QRFLQ+ + Q                              D G DG + RI+V K+ ++R P   LS+
Subjt:  LKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDG-QGRILVRKTVEARLPTVCLSQ

Query:  IPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTSA
        IP KQS   K  H+K+ I+PRP+K S   G+ + K  L +SVE+RKE+YD+ARARIF+   +    D  S      ++ S +RD  +  +  ++E   + 
Subjt:  IPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTSA

Query:  KDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNI-PPL----FTSYH-VPRNEVSLGYVS-PSPIKTVGLNQVSRTSAN
            +  +SR+AIL+DREKD  DPDYDRS  RY+ +LP++   +L  A F +Q +  P+    F  Y       ++LG  S  SP  T GLNQ SR +A 
Subjt:  KDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNI-PPL----FTSYH-VPRNEVSLGYVS-PSPIKTVGLNQVSRTSAN

Query:  VL-WP-CAGMPYTH-------TAFQAPLYQQSLSFDYPQ
         + WP  A + YTH       + FQA  Y Q LSFDY Q
Subjt:  VL-WP-CAGMPYTH-------TAFQAPLYQQSLSFDYPQ

AT3G10770.1 Single-stranded nucleic acid binding R3H protein

1.7e-43

44.29

Show/hide

Query:  LKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQE-----------------------HQG------DNGI---DG-QGRILVRKTVEARLPTVC
        + +K +MVDPFLVEAL NPRHRLTILRME DIQ+F QN E                       H G      DNG    DG   RILV KT E+R P VC
Subjt:  LKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQE-----------------------HQG------DNGI---DG-QGRILVRKTVEARLPTVC

Query:  LSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGM-AKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVD--VLSHAFTEGLDISPNRDRAEGCRVNDV
        LS+IP KQ  + +P   KIAI+PRP + S   G+G   +++L RSVE+RKEEYDKARARIF+S  S+ S D   L     E  +   NR+  E   VN+ 
Subjt:  LSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGM-AKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVD--VLSHAFTEGLDISPNRDRAEGCRVNDV

Query:  EKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLP---INLTPS-LNFAPFTVQNIPPLFTSY--HVPR-NEVSLGYVSP
              +D+G   +SRVAI++DREKD  DPDYDRSY+RYV       + + PS  +F+P  +    P    +  H+PR ++ +L Y  P
Subjt:  EKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLP---INLTPS-LNFAPFTVQNIPPLFTSY--HVPR-NEVSLGYVSP

AT3G10770.2 Single-stranded nucleic acid binding R3H protein

8.8e-45

44.56

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Query:  LKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQE-----------------------HQG------DNGI---DG-QGRILVRKTVEARLPTVC
        + +K +MVDPFLVEAL NPRHRLTILRME DIQ+F QN E                       H G      DNG    DG   RILV KT E+R P VC
Subjt:  LKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQE-----------------------HQG------DNGI---DG-QGRILVRKTVEARLPTVC

Query:  LSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGM-AKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVD--VLSHAFTEGLDISPNRDRAEGCRVNDV
        LS+IP KQ  + +P   KIAI+PRP + S   G+G   +++L RSVE+RKEEYDKARARIF+S  S+ S D   L     E  +   NR+  E   VN+ 
Subjt:  LSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGM-AKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVD--VLSHAFTEGLDISPNRDRAEGCRVNDV

Query:  EKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSY--HVPR-NEVSLGYVSP
              +D+G   +SRVAI++DREKD  DPDYDRSY+RYV+ +P       +F+P  +    P    +  H+PR ++ +L Y  P
Subjt:  EKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSY--HVPR-NEVSLGYVSP

AT3G56680.1 Single-stranded nucleic acid binding R3H protein

2.2e-48

41.69

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Query:  VDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDG-QGRILVRKTVEARLPTVCLSQIP-AKQS
        VDPFLVEALHN RHRLTILRME D+QR LQN E Q                              ++G DG + RILV KT E++ P V LS+IP AKQS
Subjt:  VDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ-----------------------------GDNGIDG-QGRILVRKTVEARLPTVCLSQIP-AKQS

Query:  SDDKPGHVKIAIRPRPSKSSD-DAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTSAKDAGN
         + K    K++I+ RPSK S   AG+    R   RSVE+RKEEYDKAR RIFS     S  D  S       + S +RD  +  +   VE   +     +
Subjt:  SDDKPGHVKIAIRPRPSKSSD-DAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTSAKDAGN

Query:  GASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPL-----FTSYH-VPRNEVSLGYVSPSPIKTVGLNQVSRTSANVLWPCA
        G +SRVAI +DREKD  DPDYDR ++RY++SLP+N   + N  PF +Q IP       FT Y+ +P     LG+  P P   +     +  +  + WP A
Subjt:  GASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPL-----FTSYH-VPRNEVSLGYVSPSPIKTVGLNQVSRTSANVLWPCA

Query:  GMPYTHT-------AFQAPLYQQSLSFDYPQ
         M Y H        + QA   QQ LSFDY Q
Subjt:  GMPYTHT-------AFQAPLYQQSLSFDYPQ

AT5G05100.1 Single-stranded nucleic acid binding R3H protein

6.7e-45

40.55

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Query:  LKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ------------------------------GDNGIDGQG-RILVRKTVEARLPTVCLS
        + DK +MVDPFLVEAL NPRHRLTILRME DIQ+F Q+ E Q                                 G+DG G RIL  KTVE+R P VCLS
Subjt:  LKDKFSMVDPFLVEALHNPRHRLTILRMEFDIQRFLQNQEHQ------------------------------GDNGIDGQG-RILVRKTVEARLPTVCLS

Query:  QIPAKQSS-DDKPGHVKIAIRPRPSKSSDDAGNGM-AKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHA--------FTEGLDISPNRDRAE--
        +IP KQ     +P   KIAI+PRP++ +  +G+G   +++L RSVE+RKEEYDKARARIF+S  S+ S D  + A         ++     P+R+  E  
Subjt:  QIPAKQSS-DDKPGHVKIAIRPRPSKSSDDAGNGM-AKRSLGRSVEQRKEEYDKARARIFSSQGSTSSVDVLSHA--------FTEGLDISPNRDRAE--

Query:  ---GCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYH------VPRNEVSLGYVSPSP
                DVE+    +D+G   +SRVAI++DREKD  DPDYDR+  RYV+  P    P  NF P       P+   +H      +PR + SL Y  P  
Subjt:  ---GCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYH------VPRNEVSLGYVSPSP

Query:  IKTVGLNQVSRTSANVLWPCAGMPYTHT
             LN      +   WP A M Y  T
Subjt:  IKTVGLNQVSRTSANVLWPCAGMPYTHT

Sequences

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CDS sequence

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ATGGTCTCTTTAGTGTTGCCAAAGTCAACGACAATCCCTCGGTCTCAAGCCGACACCGAAACTGCTACGAAGTCGGGTCTGTGTTCTTGTGGCCCTTTTGGCCCTTTTGC
GGGGATAAGATTTCTCCACACTTCTCTCTGGATTTCTCTCACTGTTTCTCTTGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGAAATCAATGGATT
CCTCTTCAGCTTCCTCCATTGATGCCTTTCCAGATTGCCTCAAAGACAAATTCTCAATGGTTGACCCCTTCTTGGTCGAGGCCCTTCACAACCCTCGACACCGTTTAACC
ATTCTGCGGATGGAATTCGATATTCAAAGGTTTTTGCAAAACCAAGAGCACCAGGGTGATAATGGCATTGATGGACAAGGGAGGATTTTGGTGAGGAAAACTGTTGAAGC
TAGACTCCCGACTGTTTGCTTATCTCAAATACCTGCGAAACAATCATCTGATGATAAACCTGGGCACGTTAAAATTGCTATTAGGCCAAGGCCAAGTAAGTCATCTGATG
ATGCAGGTAATGGTATGGCTAAGCGAAGTCTCGGTAGGAGTGTGGAGCAAAGGAAGGAAGAGTATGATAAGGCACGTGCTCGTATATTCAGCAGCCAGGGTAGTACTAGT
TCAGTGGATGTATTGTCCCATGCTTTCACCGAAGGGCTGGATATATCCCCAAACAGAGATAGGGCTGAAGGGTGTAGAGTGAACGATGTAGAGAAGTATACAAGTGCCAA
AGATGCTGGCAATGGGGCTTCTTCTCGGGTTGCCATTTTAAAAGATAGGGAAAAGGATCTTAGTGACCCGGATTATGATCGGAGTTATGAAAGGTATGTTAAGAGCCTTC
CAATTAATCTGACTCCGAGCTTGAATTTTGCTCCTTTCACCGTACAAAACATCCCGCCTTTGTTTACCAGTTACCATGTACCAAGAAACGAGGTTTCATTGGGCTATGTT
TCTCCTTCACCTATCAAGACTGTAGGATTGAATCAGGTATCTAGAACCTCAGCCAATGTGCTGTGGCCATGTGCAGGGATGCCGTACACACATACTGCTTTCCAGGCTCC
ATTGTACCAACAGTCTTTGAGTTTTGATTATCCGCAATACAATTGA

mRNA sequence

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Protein sequence

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MVSLVLPKSTTIPRSQADTETATKSGLCSCGPFGPFAGIRFLHTSLWISLTVSLEEEEEEEEEEEEEEVKSMDSSSASSIDAFPDCLKDKFSMVDPFLVEALHNPRHRLT
ILRMEFDIQRFLQNQEHQGDNGIDGQGRILVRKTVEARLPTVCLSQIPAKQSSDDKPGHVKIAIRPRPSKSSDDAGNGMAKRSLGRSVEQRKEEYDKARARIFSSQGSTS
SVDVLSHAFTEGLDISPNRDRAEGCRVNDVEKYTSAKDAGNGASSRVAILKDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNIPPLFTSYHVPRNEVSLGYV
SPSPIKTVGLNQVSRTSANVLWPCAGMPYTHTAFQAPLYQQSLSFDYPQYN

Clc04G06150 (gene) of Watermelon (cordophanus) v2 genome