; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G06330 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G06330
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein 5, chloroplastic
Genome locationClcChr04:19520634..19522962
RNA-Seq ExpressionClc04G06330
SyntenyClc04G06330
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]8.8e-6287.9Show/hide
Query:  MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDV
        MAFLLCSNPLS SLHS  F  SPSPSPSCFPA  AT +SMLLMKP GFQPKHFNGVRLRNPSFVENTV  +VKAASEIDATGETDS+EP+P AEAK EDV
Subjt:  MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]6.1e-6387.26Show/hide
Query:  MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDV
        MAFLLCSNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDV
Subjt:  MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]3.9e-6286.79Show/hide
Query:  MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTE
        MAFLLCSNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGVRLRNPSFVENTV  +VKAASEIDATGETDS+EP+PPAEAK E
Subjt:  MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]2.5e-6186.16Show/hide
Query:  MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTE
        MAFLLCSNPLS SLHS  F    SPSPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLRNPSFVENTV   VKAASEIDATGETDS+EP+P AEAK E
Subjt:  MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]8.5e-6590.38Show/hide
Query:  AFLLCSNPLSTSLHSFPFS--PSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVP
        +FLLCSNPLSTSLHSFPFS  PSPSPSCFPATSA PS MLLMKPIGFQPKHFNGVRL  PSFVEN   L+VKAASEIDA G+TDSSE QPPAEAK EDVP
Subjt:  AFLLCSNPLSTSLHSFPFS--PSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein6.1e-6188.96Show/hide
Query:  AFLLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD
        +FLL SNPLSTS H   FS SPSPSCFP TSA PSSMLLMKPIGFQPKHFNGVRLRN SFVENT  LVVKAASE DATGETDSS+ QP AEAK EDVPVD
Subjt:  AFLLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD

Query:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic4.5e-5684.42Show/hide
Query:  AFLLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD
        +FLLCSNPLSTS H     P     CFP TSA PSSMLLMKPIGFQPK FNGVRLRN  FVENT  LVVKAASE DATGE DSSE QP AEAK EDVPVD
Subjt:  AFLLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD

Query:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic2.9e-6387.26Show/hide
Query:  MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDV
        MAFLLCSNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDV
Subjt:  MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like1.9e-6286.79Show/hide
Query:  MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTE
        MAFLLCSNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGVRLRNPSFVENTV  +VKAASEIDATGETDS+EP+PPAEAK E
Subjt:  MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like5.2e-6084.71Show/hide
Query:  MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDV
        MAFLLCSNPLS SLHS     SPSPSPSCFP   +  +SM LMKP GFQPKHFNGVRLRNPSFVENTV  +VKAASEID TGETDS+EP+P AEAK EDV
Subjt:  MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic1.7e-1542.76Show/hide
Query:  LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKL
        LLC N  +T+        + S S FP  +A P S +    IG       G R+  P   +     +  A++   A         +  ++ +++ V VDKL
Subjt:  LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKL

Query:  PLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PLESKL+ER E+  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  PLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic1.4e-1457.14Show/hide
Query:  TVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        TV+ +V AA+E  A  + D S      + +  ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSKMKKLKNV
Subjt:  TVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.3e-1549.68Show/hide
Query:  LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVD
        LLC N    SL S     S S S    + +  S +L +KP   + K  N V L   S   +   +VVKAA    A+G  D +EP+   E KT    VPVD
Subjt:  LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVD

Query:  KLPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KLPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  KLPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 59.1e-1749.68Show/hide
Query:  LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVD
        LLC N    SL S     S S S    + +  S +L +KP   + K  N V L   S   +   +VVKAA    A+G  D +EP+   E KT    VPVD
Subjt:  LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVD

Query:  KLPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KLPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  KLPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCGCCGTCGCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTTC
TATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAACACAGTGTTGTTAGTTGTCAAAGCTGCAT
CTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAA
GAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATC
AAAGATGAAGAAGTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
CTCCCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCGCCGTCGCCGTCGCCGTCATGTTTTCCA
GCGACTTCTGCCACTCCGAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAACACAGT
GTTGTTAGTTGTCAAAGCTGCATCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAAC
TTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGG
AAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTAGCTCCTTCAATTCAATTCTTGCAGATTTAGAGATGTATTCTTGTCTCTCA
TTTCTTTTCCAAATAGAATGAGAAGGCATGTCGAGATGAATGCTCCCGTCGAGGGAGGACTTTGAGCTTGACTTGTATGTTTTAATTTGTAATTGACTGGTTGAATAGAG
ATGAAAGCTAGGGGTGATATACATTTCAACAAACAAAGAGTTCTGGCTTTTGATGGAGATGGACTAGTGAGTAGATTTAATTTGTGGGAAAGGATGGGCACTCATGATAG
CAAATCACTTTTGAATATCTTGTTATTTAGGATTTAGAGCTCATTTGCATTTCTGCTGTGAGCTTTGTCCTTTGATTGTGTTTGAGAACTTTGAACCCCTCAACAGATGG
GTAGTTCTTAGAGTTTAGTATAACTTGTAATTCTCTAAAACTACTCATCAAAATTTTTATATTCTTTAACAACAGGACGTGGAGATTCGGATC
Protein sequenceShow/hide protein sequence
MAFLLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQ
ERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV