CuGenDBv2

Gene ID	Clc04G06680
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	High mobility group B protein 6
Genome location	ClcChr04:20041589..20042687
RNA-Seq Expression	Clc04G06680
Synteny	Clc04G06680
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025412.1 high mobility group B protein 6 [Cucumis melo var. makuwa]

6.9e-87

91.79

Show/hide

Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQTLHHPL SP+D+PLKSGRRPLQPKNSLPNP+PSVAKIIKSKPE IQISLSGDANKEN+PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

XP_004142680.1 high mobility group B protein 6 [Cucumis sativus]

5.8e-86

91.28

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Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQTLHHPL  P+DLPLKSGRRPLQPKNSLPNP+PSVAKIIKSKPE IQISLSGDANKEN+PP       TT SIESCDLSLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

XP_008463266.1 PREDICTED: high mobility group B protein 6 [Cucumis melo]

9.9e-86

91.28

Show/hide

Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQTLHHPL SP+D+PLKSGRRPLQPKNSLPN +PSVAKIIKSKPE IQISLSGDANKEN+PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

XP_022978293.1 high mobility group B protein 13-like [Cucurbita maxima]

5.1e-82

86.15

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Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQ LH PLA+P DLPLKSGRRPLQPKNSLPNP+P+VAK+IKSKPERIQISL  DANKEN+PPIH    A  AS+ESCDLSLADELNAVKRKLERLRL+ E
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTEQML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

XP_038883293.1 uncharacterized protein LOC120074285 [Benincasa hispida]

1.3e-90

94.87

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Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQTLHHPLA+PQDLPLKSGRRPLQPKNSLPN  PSVAK IKSKPERIQISLSGDANKEN+PPIH  AT TTASIESCD SLADELNAVKRKLERLRLDGE
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSA FVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L063 Uncharacterized protein

2.8e-86

91.28

Show/hide

Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQTLHHPL  P+DLPLKSGRRPLQPKNSLPNP+PSVAKIIKSKPE IQISLSGDANKEN+PP       TT SIESCDLSLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

A0A1S3CJ78 high mobility group B protein 6

4.8e-86

91.28

Show/hide

Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQTLHHPL SP+D+PLKSGRRPLQPKNSLPN +PSVAKIIKSKPE IQISLSGDANKEN+PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

A0A5A7SJQ2 High mobility group B protein 6

3.3e-87

91.79

Show/hide

Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQTLHHPL SP+D+PLKSGRRPLQPKNSLPNP+PSVAKIIKSKPE IQISLSGDANKEN+PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

A0A5D3CEI7 High mobility group B protein 6

4.8e-86

91.28

Show/hide

Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQTLHHPL SP+D+PLKSGRRPLQPKNSLPN +PSVAKIIKSKPE IQISLSGDANKEN+PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

A0A6J1ISM0 high mobility group B protein 13-like

2.5e-82

86.15

Show/hide

Query:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE
        MQ LH PLA+P DLPLKSGRRPLQPKNSLPNP+P+VAK+IKSKPERIQISL  DANKEN+PPIH    A  AS+ESCDLSLADELNAVKRKLERLRL+ E
Subjt:  MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT
        RTEQML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGENSSLDS+EFVT
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G01910.1 unknown protein

3.7e-22

40.33

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Query:  SGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRM
        SGR+ LQP+N    P      +     E+++ +L+ +                     S D SLA+EL+A K+KLERLR D E TE++L+ERD  ++L M
Subjt:  SGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRM

Query:  KELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVTEKE
          LLQR + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++      F       GEE   E SS++ A    E+E
Subjt:  KELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVTEKE

AT5G01910.2 unknown protein

9.1e-21

43.15

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Query:  SGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRM
        SGR+ LQP+N    P      +     E+++ +L+ +                     S D SLA+EL+A K+KLERLR D E TE++L+ERD  ++L M
Subjt:  SGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRM

Query:  KELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK
          LLQR + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++
Subjt:  KELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGACTCTCCACCATCCCTTAGCCTCTCCTCAAGATCTTCCTCTCAAGTCCGGCCGCCGCCCACTCCAGCCGAAGAATTCTCTCCCAAATCCTCTTCCTTCCGTCGC
CAAAATCATCAAATCCAAGCCGGAAAGGATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAACAATCCGCCGATTCACCCAGCGGCAACTGCCACAACGGCGAGTA
TTGAGTCTTGTGATTTGTCTCTGGCGGATGAGCTTAATGCGGTTAAGAGGAAGCTCGAGAGATTGAGATTGGACGGTGAACGAACGGAGCAGATGTTGAGAGAGAGGGAT
TTGGTCTTGGAGTTACGGATGAAGGAGCTGTTGCAGAGAAGTCAAGAGCAGAGAGATCTGGAGATGGAAGTCGATAGGTTATTCAGATTAAAGGAACTCAGATCGTACTG
TATGAGGATTTCTCCGATTCGGAGTCTCAGAGAGAAAGAGCGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCG
AAAACTCCTCGTTGGATTCTGCAGAATTCGTAACAGAAAAAGAAATCAATGTAATACCTCATTATGATCTTCTTTATGCACTGAACGAAACTTCTGAGTTGTACTCAATA
TCATTCTCCATCTTCTTCACTTCAATTAATGCTTGA

mRNA sequence

Show/hide mRNA sequence

GTTATTATTAAATAAAGTAGCCGTTGCCGCCTGTATGCTTTCAAATTCAAACCCTAAAAACACAAAAATCCAAATCCTTGAGAACCCCCTTTTCTCCCATTCTTCATTCT
CTTTTTCTATGATTCCATTTCTTCTCTTTCAAACCAATTCTCCATCTCCATCGATATGCAGACTCTCCACCATCCCTTAGCCTCTCCTCAAGATCTTCCTCTCAAGTCCG
GCCGCCGCCCACTCCAGCCGAAGAATTCTCTCCCAAATCCTCTTCCTTCCGTCGCCAAAATCATCAAATCCAAGCCGGAAAGGATCCAGATCTCCCTCTCCGGCGACGCC
AATAAGGAGAACAATCCGCCGATTCACCCAGCGGCAACTGCCACAACGGCGAGTATTGAGTCTTGTGATTTGTCTCTGGCGGATGAGCTTAATGCGGTTAAGAGGAAGCT
CGAGAGATTGAGATTGGACGGTGAACGAACGGAGCAGATGTTGAGAGAGAGGGATTTGGTCTTGGAGTTACGGATGAAGGAGCTGTTGCAGAGAAGTCAAGAGCAGAGAG
ATCTGGAGATGGAAGTCGATAGGTTATTCAGATTAAAGGAACTCAGATCGTACTGTATGAGGATTTCTCCGATTCGGAGTCTCAGAGAGAAAGAGCGAGAAAAGATTTTC
ACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTGCAGAATTCGTAACAGAAAAAGAAATCAATGTAAT
ACCTCATTATGATCTTCTTTATGCACTGAACGAAACTTCTGAGTTGTACTCAATATCATTCTCCATCTTCTTCACTTCAATTAATGCTTGA

Protein sequence

Show/hide protein sequence

MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERD
LVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVTEKEINVIPHYDLLYALNETSELYSI
SFSIFFTSINA

Clc04G06680 (gene) of Watermelon (cordophanus) v2 genome