; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G06860 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G06860
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionIBR domain containing protein
Genome locationClcChr04:20398560..20399069
RNA-Seq ExpressionClc04G06860
SyntenyClc04G06860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603545.1 hypothetical protein SDJN03_04154, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7082.84Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        MLCETSDYP KSLQFKHNDKFFSK+L+RESSRAN+SSRIYYGGL+GAVPFVWESQPGTP+HRFSDDLTPPLTPPPSYFS S++KP K RSKSLSL HIFF
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR
        N KRK DLLTPP SKSASLPSSGS FDSA GAK  GRRSARRF   +S SKE  DAAA+G VLCFG GR
Subjt:  NSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR

XP_008464261.1 PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo]1.1e-7388.24Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        M+CETSDYPQKSLQFK NDKFFSKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDS+KKPLKKRSKSLSLLHIFF
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKFDLLT-PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR
        NSKRKFDLL+ PP SKSASLPS GS FDSAAGAK TGRRSARRFPT     KEE +AAA+G VLCFG GR
Subjt:  NSKRKFDLLT-PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR

XP_011653717.1 uncharacterized protein LOC105435254 [Cucumis sativus]8.6e-7185.88Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        M+CETS+YPQKSLQFK NDKF SKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDS+KKPLKKRSKSLSLLHIFF
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKFDLLT-PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR
        +SKRKFDLL+ PP SKS SL SSGS FDSAAGAK TGRRSARRFPT     KEE +AAAT  VLCFG GR
Subjt:  NSKRKFDLLT-PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR

XP_022925049.1 uncharacterized protein LOC111432413 [Cucurbita moschata]1.5e-6278.36Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        MLCETSD   +SLQ KHNDKFFSK+L+RESSRA+YSSR+YY GL+GAVPF WESQPGTPIHRFSDDLTPPLTPPPSYFSDS+KKP KKRSKSLSL HIFF
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKF-DLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAA-TGWVLCFGTGR
        N KRK  DLL+PPFSKSASLPSSGS FDSAA     GRR  RR P+ IS+SKE+  AAA TG VLCFG GR
Subjt:  NSKRKF-DLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAA-TGWVLCFGTGR

XP_038882810.1 uncharacterized protein LOC120073955 [Benincasa hispida]4.7e-7789.94Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        MLCETSDYPQKSLQFK NDKFFSKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPIHRFSDDLTP LTPPPSYFSDSVKKPLKKRSKSLSLLHI F
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR
        NSKRK DLL+PPFSKSASLPSSGS FDSA GAK TGRRS RRFPT IS SKEE DAAATG +LCFG  R
Subjt:  NSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR

TrEMBL top hitse value%identityAlignment
A0A0A0L1H9 Uncharacterized protein4.2e-7185.88Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        M+CETS+YPQKSLQFK NDKF SKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDS+KKPLKKRSKSLSLLHIFF
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKFDLLT-PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR
        +SKRKFDLL+ PP SKS SL SSGS FDSAAGAK TGRRSARRFPT     KEE +AAAT  VLCFG GR
Subjt:  NSKRKFDLLT-PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR

A0A1S3CL26 uncharacterized protein LOC1035021865.3e-7488.24Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        M+CETSDYPQKSLQFK NDKFFSKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDS+KKPLKKRSKSLSLLHIFF
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKFDLLT-PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR
        NSKRKFDLL+ PP SKSASLPS GS FDSAAGAK TGRRSARRFPT     KEE +AAA+G VLCFG GR
Subjt:  NSKRKFDLLT-PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR

A0A6J1CSP7 uncharacterized protein LOC1110138651.0e-4878.2Show/hide
Query:  TSDYPQKSLQFKHNDKFFSKILSRESSRANYSSR-IYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSK
        +SDYPQKSLQ K NDKFFSK+LSRESSRAN SSR +YYGG +GAVPF WESQPGTP HRFSD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFFN K
Subjt:  TSDYPQKSLQFKHNDKFFSKILSRESSRANYSSR-IYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSK

Query:  RKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTG
        RKFDLL PPFS+SA+LPSSGS  DS A  K  G
Subjt:  RKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTG

A0A6J1EB06 uncharacterized protein LOC1114324137.1e-6378.36Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        MLCETSD   +SLQ KHNDKFFSK+L+RESSRA+YSSR+YY GL+GAVPF WESQPGTPIHRFSDDLTPPLTPPPSYFSDS+KKP KKRSKSLSL HIFF
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKF-DLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAA-TGWVLCFGTGR
        N KRK  DLL+PPFSKSASLPSSGS FDSAA     GRR  RR P+ IS+SKE+  AAA TG VLCFG GR
Subjt:  NSKRKF-DLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAA-TGWVLCFGTGR

A0A6J1IKR7 uncharacterized protein LOC1114783349.0e-5883.57Show/hide
Query:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF
        MLCETSDYP KSLQFKHNDKFFSK+L+RESSRAN+SSRIYYGGL+GAVPFVWESQPGTP+HRFSDDLTPPLTPPPSYFS S++KP K RSKSLSL HIFF
Subjt:  MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFF

Query:  NSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSA
        N KRK DLLTPP SKSASLPSSGS FDSA GA    R  A
Subjt:  NSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G40475.1 unknown protein4.6e-1436.71Show/hide
Query:  NDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHR-FSDDL-TPPLTPPPSYFSDSVKKPLKKRSKSLSLLHI-FFNSKRKFDLLTPPFS
        N    SKI+ +ESS+ N SSRIYY G   +VPF+WE++PGTP H  FS+ L  PPLTPPPSY+S S      K SK+ ++    F  +     +  P FS
Subjt:  NDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHR-FSDDL-TPPLTPPPSYFSDSVKKPLKKRSKSLSLLHI-FFNSKRKFDLLTPPFS

Query:  KSASLPSSGSPFDSAAGAKSTGRRSARRFPTRIS----NSKEEVDAAATGWVLCFGTG
         S++  SS S + S++       R  + +    S    + +EE+ +++    LC+  G
Subjt:  KSASLPSSGSPFDSAAGAKSTGRRSARRFPTRIS----NSKEEVDAAATGWVLCFGTG

AT3G56260.2 unknown protein4.5e-0937.32Show/hide
Query:  YYGGLSGAVPFVWESQPGTP-IHRFSDDLTP-PLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDL--------LTPPFSKSASLPSSGSPFDSA
        YYGG S  +PF+WES+PGTP  H  SD   P PLTPPPSY+S  +    + +SK  S L  F +     DL         T   S S S  SS S F S+
Subjt:  YYGGLSGAVPFVWESQPGTP-IHRFSDDLTP-PLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDL--------LTPPFSKSASLPSSGSPFDSA

Query:  AGAKSTGRRS-ARRFPTRISNSKE-EVDAAATGWVLCFGTGR
               R S  ++ P   +N +E E+ ++ T  + C   GR
Subjt:  AGAKSTGRRS-ARRFPTRISNSKE-EVDAAATGWVLCFGTGR

AT4G25845.1 BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2)9.3e-0745Show/hide
Query:  LSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKP
        +SR SS   Y  R+  G     VPF WE QPGTPI+    ++ PPL+PPP+  S  + KP
Subjt:  LSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKP

AT4G25850.2 OSBP(oxysterol binding protein)-related protein 4B9.3e-0745Show/hide
Query:  LSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKP
        +SR SS   Y  R+  G     VPF WE QPGTPI+    ++ PPL+PPP+  S  + KP
Subjt:  LSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKP

AT5G01790.1 unknown protein7.6e-0935.92Show/hide
Query:  YYGGLSGAVPFVWESQPGTPIHRFSDDLT-PPLTPPPSYFS---DSVKKPLKKRSKSLSLL---HIFF-----NSKRKFDLLTPPFSKSASLPSSGSPFD
        YY G +GAVPF WES PGTP H  S+  T PPLTPPPS+FS   D +++  KK +K +  L    +F+     N K K    + P S S  +    + +D
Subjt:  YYGGLSGAVPFVWESQPGTPIHRFSDDLT-PPLTPPPSYFS---DSVKKPLKKRSKSLSLL---HIFF-----NSKRKFDLLTPPFSKSASLPSSGSPFD

Query:  SAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR
               T R   RRF +  S++   +  + +    CFG  R
Subjt:  SAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTGTGAAACTTCCGATTATCCTCAAAAATCTCTTCAATTCAAGCACAATGACAAATTCTTCTCCAAGATTCTGTCCAGAGAAAGTTCTAGAGCCAATTACTCTTC
CAGAATCTACTACGGCGGATTGTCCGGCGCTGTTCCCTTCGTTTGGGAGTCTCAGCCAGGTACGCCTATTCATCGATTTTCCGATGACCTAACTCCTCCTCTTACTCCTC
CTCCTTCCTACTTTTCCGATTCCGTTAAAAAACCGCTCAAGAAACGATCCAAATCTCTCTCTCTTCTCCACATCTTCTTCAATTCCAAGAGGAAATTCGATCTGTTGACG
CCGCCGTTTTCTAAATCCGCCTCACTGCCGTCTTCTGGATCGCCGTTCGACTCGGCTGCAGGCGCGAAGTCCACAGGGCGGCGTTCGGCGCGGCGGTTTCCGACTAGAAT
CTCGAATTCGAAGGAGGAAGTGGATGCGGCGGCTACTGGTTGGGTACTTTGTTTCGGAACCGGTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTGTGAAACTTCCGATTATCCTCAAAAATCTCTTCAATTCAAGCACAATGACAAATTCTTCTCCAAGATTCTGTCCAGAGAAAGTTCTAGAGCCAATTACTCTTC
CAGAATCTACTACGGCGGATTGTCCGGCGCTGTTCCCTTCGTTTGGGAGTCTCAGCCAGGTACGCCTATTCATCGATTTTCCGATGACCTAACTCCTCCTCTTACTCCTC
CTCCTTCCTACTTTTCCGATTCCGTTAAAAAACCGCTCAAGAAACGATCCAAATCTCTCTCTCTTCTCCACATCTTCTTCAATTCCAAGAGGAAATTCGATCTGTTGACG
CCGCCGTTTTCTAAATCCGCCTCACTGCCGTCTTCTGGATCGCCGTTCGACTCGGCTGCAGGCGCGAAGTCCACAGGGCGGCGTTCGGCGCGGCGGTTTCCGACTAGAAT
CTCGAATTCGAAGGAGGAAGTGGATGCGGCGGCTACTGGTTGGGTACTTTGTTTCGGAACCGGTAGATGA
Protein sequenceShow/hide protein sequence
MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLT
PPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR