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Clc04G06920 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G06920
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr04:20488844..20489490
RNA-Seq ExpressionClc04G06920
SyntenyClc04G06920
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595568.1 hypothetical protein SDJN03_12121, partial [Cucurbita argyrosperma subsp. sororia]3.5e-0868.33Show/hide
Query:  MSSWRFGNTIPILMRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSSD
        MSS RFGNTIPILM VALR+  LVFR VSL I DLIA+A+SAIRFSR   +P + VS +D
Subjt:  MSSWRFGNTIPILMRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSSD
KAG6603548.1 hypothetical protein SDJN03_04157, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1570.27Show/hide
Query:  MSSWRFGNTIPILMRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSSDRYSPMSLMIIRQNR
        MSS RFG++I ILM VALR+T L+FR VS+LITDLIAVA+SAIRFSRW   PT+Q+  S+RYS MSLMIIR +R
Subjt:  MSSWRFGNTIPILMRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSSDRYSPMSLMIIRQNR
KGN54430.1 hypothetical protein Csa_012790 [Cucumis sativus]3.5e-1668.35Show/hide
Query:  MSSWRFGNTIPIL-MRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSS----DRYSPMSLMIIRQNR
        M  WRFGNTIPIL MRV LR+TFL+FR  S  ITDLIA+ASSAIRF RWHF  +LQV SS    +RYSP+SLMI+R +R
Subjt:  MSSWRFGNTIPIL-MRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSS----DRYSPMSLMIIRQNR
TrEMBL top hitse value%identityAlignment
A0A0A0KXR7 Uncharacterized protein1.7e-1668.35Show/hide
Query:  MSSWRFGNTIPIL-MRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSS----DRYSPMSLMIIRQNR
        M  WRFGNTIPIL MRV LR+TFL+FR  S  ITDLIA+ASSAIRF RWHF  +LQV SS    +RYSP+SLMI+R +R
Subjt:  MSSWRFGNTIPIL-MRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSS----DRYSPMSLMIIRQNR
A0A7N2M690 Uncharacterized protein9.6e-0443.28Show/hide
Query:  NTIPILMRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSSDRYSPMSLMIIRQNR
        + I +L+ V LR++  V++  ++L+ D + V  S IRFSR+ F PT  VS+  RYSPMS M+ R +R
Subjt:  NTIPILMRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSSDRYSPMSLMIIRQNR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTTGGAGATTTGGGAATACGATCCCAATATTGATGCGTGTAGCTCTCAGAAGAACTTTCCTTGTCTTCCGCGGCGTTTCTCTTTTGATCACCGATCTCATAGC
CGTCGCCTCCTCCGCCATCAGATTTTCCCGTTGGCATTTCACCCCAACCCTCCAAGTTTCTTCTTCCGATAGGTACTCTCCGATGTCTCTCATGATTATTCGCCAAAATC
GTTGA
mRNA sequenceShow/hide mRNA sequence
AGAAAATTGGAATAAAATAGTGGGGAAGGATAGAATAGTAATTAAACAAAAGGGTTGAGATTCTCGTGATTGACGAAGAAAAGAAGAAGAGAAACAGAGAGAAAGAGAGA
AGGAAGGAAGTGAATAGAGAGTTGCGTTGGAGAAAAGGAATGTCGTCTTGGAGATTTGGGAATACGATCCCAATATTGATGCGTGTAGCTCTCAGAAGAACTTTCCTTGT
CTTCCGCGGCGTTTCTCTTTTGATCACCGATCTCATAGCCGTCGCCTCCTCCGCCATCAGATTTTCCCGTTGGCATTTCACCCCAACCCTCCAAGTTTCTTCTTCCGATA
GGTACTCTCCGATGTCTCTCATGATTATTCGCCAAAATCGTTGACTCTTAATTTCATCTTCTTCATCATCGCTCTCGCTCCCTTCCTCTGCTTTTCTTCCTCTTCATTTT
GATTTCATTTTCAACAAATTTCAGCAGGATTCTCGTTTTTTTTTCCCCCTCTTTTTTCGTGTTTGTTTGCTTCTCTTTCTTGAAATTTATGTGAAGTTAGGTCATAATGT
GTGTGTAATCCGATGGAATTGATTCTAGTTTTTGTAGTGACTTCCATTTAAGAAGATGAAGTAATTTCAGAGTTCAATTATACAAAATTACTCTAAA
Protein sequenceShow/hide protein sequence
MSSWRFGNTIPILMRVALRRTFLVFRGVSLLITDLIAVASSAIRFSRWHFTPTLQVSSSDRYSPMSLMIIRQNR