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Clc04G07320 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G07320
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein trichome birefringence-like 3
Genome locationClcChr04:21025013..21025568
RNA-Seq ExpressionClc04G07320
SyntenyClc04G07320
Gene Ontology termsGO:0009827 - plant-type cell wall modification (biological process)
GO:0030244 - cellulose biosynthetic process (biological process)
GO:0045489 - pectin biosynthetic process (biological process)
GO:0045492 - xylan biosynthetic process (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0005886 - plasma membrane (cellular component)
GO:1990538 - xylan O-acetyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK29246.1 protein trichome birefringence-like 3 [Cucumis melo var. makuwa]1.5e-1689.47Show/hide
Query:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

XP_004148615.1 protein trichome birefringence-like 3 [Cucumis sativus]1.2e-1589.66Show/hide
Query:  MSLLAPSPSPLMAK-PSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSLLA SPS LMAK PS+ARLKPHLPFLTVV CAFAFLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLMAK-PSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

XP_008464204.1 PREDICTED: protein trichome birefringence-like 3 [Cucumis melo]1.5e-1689.47Show/hide
Query:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

XP_022978176.1 protein trichome birefringence-like 3 isoform X1 [Cucurbita maxima]3.2e-1179.31Show/hide
Query:  MSLLAPSPSPLM-AKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSL A SPS LM +K  I RLKP LPFLTVV CAF+FLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLM-AKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

XP_038883159.1 protein trichome birefringence-like 3 [Benincasa hispida]1.2e-1380.7Show/hide
Query:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSL APSPS LMAKPS+ARLKPHLPFL V+ CAFAFL LF+TE ITFFSS SI KLK
Subjt:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

TrEMBL top hitse value%identityAlignment
A0A0A0KXK5 Thioredoxin domain-containing protein6.0e-1689.66Show/hide
Query:  MSLLAPSPSPLMAK-PSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSLLA SPS LMAK PS+ARLKPHLPFLTVV CAFAFLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLMAK-PSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

A0A1S3CLE2 protein trichome birefringence-like 37.1e-1789.47Show/hide
Query:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

A0A5A7UZW7 Protein trichome birefringence-like 37.1e-1789.47Show/hide
Query:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

A0A5D3E013 Protein trichome birefringence-like 37.1e-1789.47Show/hide
Query:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

A0A6J1IM07 protein trichome birefringence-like 3 isoform X11.5e-1179.31Show/hide
Query:  MSLLAPSPSPLM-AKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK
        MSL A SPS LM +K  I RLKP LPFLTVV CAF+FLALFYTERITFFSS SIFKLK
Subjt:  MSLLAPSPSPLM-AKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTGTTGGCACCGTCTCCCTCTCCGTTGATGGCGAAACCCTCGATCGCCCGACTCAAGCCTCACCTCCCCTTTCTCACCGTCGTCTTTTGTGCCTTCGCCTTCCT
TGCTCTCTTCTACACCGAGCGGATCACTTTCTTCTCCTCCACCTCCATTTTTAAACTCAAGGGAGAAGCGAGTGGAGGAGGAGCAGTGGAGAGACCCGTTGACGGACGAC
CGGTTCGAGTTCGACCCGGAGGAGTGCAGCGTAGTGAAGGGGAAGTGGGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTTGTTGGCACCGTCTCCCTCTCCGTTGATGGCGAAACCCTCGATCGCCCGACTCAAGCCTCACCTCCCCTTTCTCACCGTCGTCTTTTGTGCCTTCGCCTTCCT
TGCTCTCTTCTACACCGAGCGGATCACTTTCTTCTCCTCCACCTCCATTTTTAAACTCAAGGGAGAAGCGAGTGGAGGAGGAGCAGTGGAGAGACCCGTTGACGGACGAC
CGGTTCGAGTTCGACCCGGAGGAGTGCAGCGTAGTGAAGGGGAAGTGGGTGTTTAA
Protein sequenceShow/hide protein sequence
MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLKGEASGGGAVERPVDGRPVRVRPGGVQRSEGEVGV