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Clc04G07970 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G07970
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr04:21717979..21718739
RNA-Seq ExpressionClc04G07970
SyntenyClc04G07970
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2013589.1 hypothetical protein ES319_D09G166000v1 [Gossypium barbadense]1.1e-0948.72Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + V + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

KAE8649554.1 hypothetical protein Csa_018195 [Cucumis sativus]2.0e-1972Show/hide
Query:  MVFWNWRCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTE
        M F N++CLFL FLL  V FRNGVI VE SSRPFSI PIL+ +KGFKGYY+S+IFAT+GIECKCCD IGGK   E
Subjt:  MVFWNWRCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTE

KAG6595355.1 hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia]5.9e-1652.69Show/hide
Query:  EMVFWNWRCLFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDG-IGGKCSTEF-TTSCSNLHCSPWKQY
        EM    W+   +  +LV   F NGV+VE SSR   + P+   K GF+  Y+S + AT+GIECKCCD  IGGKCST F   SCSNL CSPWK Y
Subjt:  EMVFWNWRCLFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDG-IGGKCSTEF-TTSCSNLHCSPWKQY

PRQ43088.1 hypothetical protein RchiOBHm_Chr3g0464651 [Rosa chinensis]8.2e-1047.56Show/hide
Query:  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY
        L L  LLVA +    + VEA  RP S+F         +GY  SK+F T+GI C+CCDG+GG+C + +T SCS+L C PWKQ+
Subjt:  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY

TYJ19036.1 hypothetical protein E1A91_A09G163400v1 [Gossypium mustelinum]1.4e-0947.44Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + + + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

TrEMBL top hitse value%identityAlignment
A0A0A0KXD1 Uncharacterized protein8.8e-3480.22Show/hide
Query:  MVFWNWRCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY
        M F N++CLFL FLL  V FRNGVI VE SSRPFSI PIL+ +KGFKGYY+S+IFAT+GIECKCCD IGGKCSTEFTTSCSNLHCSPWKQY
Subjt:  MVFWNWRCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY

A0A0D2NTZ8 Uncharacterized protein5.2e-1048.72Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + V + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

A0A2P6R9H6 Uncharacterized protein4.0e-1047.56Show/hide
Query:  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY
        L L  LLVA +    + VEA  RP S+F         +GY  SK+F T+GI C+CCDG+GG+C + +T SCS+L C PWKQ+
Subjt:  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY

A0A5D2JJ88 Uncharacterized protein5.2e-1048.72Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + V + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

A0A5J5Q4W0 Uncharacterized protein5.2e-1048.72Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + V + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTGTTTTTTGAGATGGTTTTTTGGAATTGGAGGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGTAGCAG
ACCCTTCTCAATCTTCCCAATACTAGAACCTAAAAAAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAACAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTG
GAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTGTTTTTTGAGATGGTTTTTTGGAATTGGAGGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGTAGCAG
ACCCTTCTCAATCTTCCCAATACTAGAACCTAAAAAAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAACAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTG
GAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGAATCCAATCTCTATTTCCTTCCTTGCAATTCTCTCTCTCT
CTCTCTGTTTTTTTTCCCTTGTAAAATACAAATGAGATAATATGGAATACGAGTATTTGGTGATGACAATGATATTATATATAAAACAATACTTATAGTGT
Protein sequenceShow/hide protein sequence
MMLFFEMVFWNWRCLFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY