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Clc04G08520 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G08520
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCyclin-dependent protein kinase inhibitor SMR3-like
Genome locationClcChr04:22250479..22251291
RNA-Seq ExpressionClc04G08520
SyntenyClc04G08520
Gene Ontology termsGO:0032875 - regulation of DNA endoreduplication (biological process)
GO:0045839 - negative regulation of mitotic nuclear division (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR040389 - Cyclin-dependent protein kinase inhibitor SMR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032644.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa]1.8e-3763.4Show/hide
Query:  MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIF-----SLNTAP--PQPAHAL--APAESISAVHDDDD-NDGYKTPISSDHKIPVLPQCPPAPRRPK
        M SEFQEIS   P  +P   I+    RL+ IDF+F     S+ T P  P P+ ++   P  SISAV DD++ +DG+ TPISS HKIPV+P CPPAP RPK
Subjt:  MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIF-----SLNTAP--PQPAHAL--APAESISAVHDDDD-NDGYKTPISSDHKIPVLPQCPPAPRRPK

Query:  PISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE
        PISLSRTLS RAS VRRGF VYI+DEIVDSIF  DLLH KSKKARKDDDNGGE
Subjt:  PISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE

KAE8649529.1 hypothetical protein Csa_017979 [Cucumis sativus]2.8e-3865.13Show/hide
Query:  MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIF----SLNTAP---PQPAHAL--APAESISAVHDDDD-NDGYKTPISSDHKIPVLPQCPPAPRRPK
        MASEFQEIS   P  +P         RL+ IDF+F    S++T P   P P+ ++   P  SISAV DDD+ NDG+ TPISS HKIPV+P CPPAP RPK
Subjt:  MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIF----SLNTAP---PQPAHAL--APAESISAVHDDDD-NDGYKTPISSDHKIPVLPQCPPAPRRPK

Query:  PISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKS-KKARKDDDNG
        PISLSRTLSPRASGVRRGF VYI+D+IVDSIF  DLLHQKS KKARKDDDNG
Subjt:  PISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKS-KKARKDDDNG

KAG6603657.1 Cyclin-dependent protein kinase inhibitor SMR3, partial [Cucurbita argyrosperma subsp. sororia]2.8e-3864.47Show/hide
Query:  MASEFQEISLTLPDQIPFSPI-TPQSFRL------NQIDFIFSLNTAPPQPAHALAPAESISAVHD--DDDNDGYKTPISSDHKIPVLPQCPPAPRRPKP
        MAS FQEIS     +I F+ I TPQSFR+      NQIDFIF+LN  PP  + +++ +   SA  D   DD+DG++TP SSDHKIPV+ QCPPAPRRPKP
Subjt:  MASEFQEISLTLPDQIPFSPI-TPQSFRL------NQIDFIFSLNTAPPQPAHALAPAESISAVHD--DDDNDGYKTPISSDHKIPVLPQCPPAPRRPKP

Query:  ISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE
        IS SRTL PR SGVRRGFRVYI+DEI DSIFC DLLHQK+KKARK + NGGE
Subjt:  ISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE

XP_022950456.1 uncharacterized protein LOC111453550 [Cucurbita moschata]2.8e-3864.47Show/hide
Query:  MASEFQEISLTLPDQIPFSPI-TPQSFRL------NQIDFIFSLNTAPPQPAHALAPAESISAVHD--DDDNDGYKTPISSDHKIPVLPQCPPAPRRPKP
        MAS FQEIS     +I F+ I TPQSFR+      NQIDFIF+LN  PP  + +++ +   SA  D   DD+DG++TP SSDHKIPV+ QCPPAPRRPKP
Subjt:  MASEFQEISLTLPDQIPFSPI-TPQSFRL------NQIDFIFSLNTAPPQPAHALAPAESISAVHD--DDDNDGYKTPISSDHKIPVLPQCPPAPRRPKP

Query:  ISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE
        IS SRTL PR SGVRRGFRVYI+DEI DSIFC DLLHQK+KKARK + NGGE
Subjt:  ISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE

XP_038877666.1 cyclin-dependent protein kinase inhibitor SMR3-like [Benincasa hispida]4.4e-5281.51Show/hide
Query:  MASEFQEISLTLPDQIPFSPITPQ-SFRLNQIDFIFSLNTAPPQPAHALAPAESISAVHDDDDNDGYKTPISSDHKIPVLPQCPPAPRRPKPISLSRTLS
        MASEFQEISLTLPDQI FS ITPQ +FRLNQIDFIFSLN  P +    LAPAESISAV  DDD+DG++TP+SSDHKIPV+  CPPAP+RPKPISLSRT S
Subjt:  MASEFQEISLTLPDQIPFSPITPQ-SFRLNQIDFIFSLNTAPPQPAHALAPAESISAVHDDDDNDGYKTPISSDHKIPVLPQCPPAPRRPKPISLSRTLS

Query:  PRASGVRRGFRVYIADEIVDSIFCSDLLHQKS-KKARK-DDDNGGE
         RASGVRRGFRVYI+DEIVDSIFCSDLLHQKS KKARK DDDNGGE
Subjt:  PRASGVRRGFRVYIADEIVDSIFCSDLLHQKS-KKARK-DDDNGGE

TrEMBL top hitse value%identityAlignment
A0A0A0KZJ9 Uncharacterized protein9.4e-4065.58Show/hide
Query:  MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIF----SLNTAP---PQPAHAL--APAESISAVHDDDD-NDGYKTPISSDHKIPVLPQCPPAPRRPK
        MASEFQEIS   P  +P         RL+ IDF+F    S++T P   P P+ ++   P  SISAV DDD+ NDG+ TPISS HKIPV+P CPPAP RPK
Subjt:  MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIF----SLNTAP---PQPAHAL--APAESISAVHDDDD-NDGYKTPISSDHKIPVLPQCPPAPRRPK

Query:  PISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKS-KKARKDDDNGGE
        PISLSRTLSPRASGVRRGF VYI+D+IVDSIF  DLLHQKS KKARKDDDNGGE
Subjt:  PISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKS-KKARKDDDNGGE

A0A5A7SN91 Cyclin-dependent protein kinase inhibitor SMR3-like8.8e-3863.4Show/hide
Query:  MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIF-----SLNTAP--PQPAHAL--APAESISAVHDDDD-NDGYKTPISSDHKIPVLPQCPPAPRRPK
        M SEFQEIS   P  +P   I+    RL+ IDF+F     S+ T P  P P+ ++   P  SISAV DD++ +DG+ TPISS HKIPV+P CPPAP RPK
Subjt:  MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIF-----SLNTAP--PQPAHAL--APAESISAVHDDDD-NDGYKTPISSDHKIPVLPQCPPAPRRPK

Query:  PISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE
        PISLSRTLS RAS VRRGF VYI+DEIVDSIF  DLLH KSKKARKDDDNGGE
Subjt:  PISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE

A0A5D2MEF8 Uncharacterized protein1.2e-1352.17Show/hide
Query:  SAVHDDDDNDGYKTPISSDHKIPVLPQCPPAPRRPKPISLSR---TLSPRASGVRRGFRVYIADEIVDSIFCSDLL---HQKSKKARKDDDN
        S  +DD D+DG+KTP S DHKIPV+ QCPPAPR+PKP+S ++   +  P +SG R   ++  A E V+S+F SD+L   H+K KKARK+D N
Subjt:  SAVHDDDDNDGYKTPISSDHKIPVLPQCPPAPRRPKPISLSR---TLSPRASGVRRGFRVYIADEIVDSIFCSDLL---HQKSKKARKDDDN

A0A6J1CQ22 cyclin-dependent protein kinase inhibitor SMR2-like6.5e-3361.64Show/hide
Query:  MASEFQEISLTLPDQIPFSPITPQSFRL------NQIDFIFSLNTAPPQPAHALAPAESISAVHDDDDNDGYKTPISSDHKIPVLPQCPPAPRRPKPISL
        MAS FQEISL+   QI    I+P+SF L      NQIDF+F+LNT   Q        +SISA     D+DG++TP SSDHKIPV+ QCPPAPRRPKPIS 
Subjt:  MASEFQEISLTLPDQIPFSPITPQSFRL------NQIDFIFSLNTAPPQPAHALAPAESISAVHDDDDNDGYKTPISSDHKIPVLPQCPPAPRRPKPISL

Query:  -SRTLSPR-ASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDD
         SR  SPR ASGVRRGFRVYI+DEIV+SIF S   HQK KKAR+DD
Subjt:  -SRTLSPR-ASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDD

A0A6J1GEW0 uncharacterized protein LOC1114535501.4e-3864.47Show/hide
Query:  MASEFQEISLTLPDQIPFSPI-TPQSFRL------NQIDFIFSLNTAPPQPAHALAPAESISAVHD--DDDNDGYKTPISSDHKIPVLPQCPPAPRRPKP
        MAS FQEIS     +I F+ I TPQSFR+      NQIDFIF+LN  PP  + +++ +   SA  D   DD+DG++TP SSDHKIPV+ QCPPAPRRPKP
Subjt:  MASEFQEISLTLPDQIPFSPI-TPQSFRL------NQIDFIFSLNTAPPQPAHALAPAESISAVHD--DDDNDGYKTPISSDHKIPVLPQCPPAPRRPKP

Query:  ISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE
        IS SRTL PR SGVRRGFRVYI+DEI DSIFC DLLHQK+KKARK + NGGE
Subjt:  ISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE

SwissProt top hitse value%identityAlignment
Q9LZ60 Cyclin-dependent protein kinase inhibitor SMR38.0e-0441.38Show/hide
Query:  HDD---DDNDGYKTPISSDHKIPVLPQ--CPPAPRRPKPISLS---RTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARK
        H+D   ++ +G KTP SSDHKIP +    CPPAPR+PKP   S   R L+P    V     + ++ EI   +F  D L ++ KK+RK
Subjt:  HDD---DDNDGYKTPISSDHKIPVLPQ--CPPAPRRPKPISLS---RTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARK

Arabidopsis top hitse value%identityAlignment
AT1G08180.1 unknown protein2.2e-0437.31Show/hide
Query:  TPISSDHKIPVLPQCPPAPRRPKPISLSRTLSPRASGVRRGFRVY-IADEIVDSIFCSDLLHQKSKK
        TP SSDHKIP +  CPP PR+ +P  +S T   R S   R F    +  + V+++F  +  H + K+
Subjt:  TPISSDHKIPVLPQCPPAPRRPKPISLSRTLSPRASGVRRGFRVY-IADEIVDSIFCSDLLHQKSKK

AT5G02420.1 unknown protein5.7e-0541.38Show/hide
Query:  HDD---DDNDGYKTPISSDHKIPVLPQ--CPPAPRRPKPISLS---RTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARK
        H+D   ++ +G KTP SSDHKIP +    CPPAPR+PKP   S   R L+P    V     + ++ EI   +F  D L ++ KK+RK
Subjt:  HDD---DDNDGYKTPISSDHKIPVLPQ--CPPAPRRPKPISLS---RTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKARK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAGAATTCCAAGAAATCTCCCTCACTCTGCCTGATCAGATTCCTTTCTCCCCCATTACGCCTCAATCCTTCCGCCTCAACCAGATCGACTTTATTTTCTCTCT
AAATACTGCTCCGCCTCAACCAGCCCATGCCCTCGCTCCAGCTGAGTCCATCTCCGCCGTTCACGATGACGACGATAACGACGGTTACAAAACCCCGATCTCTTCAGATC
ATAAGATTCCTGTGCTTCCACAGTGTCCGCCGGCTCCTAGAAGACCGAAACCGATCTCCTTGTCGAGAACCTTGTCGCCGAGAGCTTCCGGCGTTCGCAGAGGTTTTCGA
GTGTATATCGCTGACGAAATCGTTGATTCCATCTTCTGCTCCGATTTGCTGCATCAGAAGAGTAAGAAAGCTCGGAAGGACGATGATAATGGCGGTGAATGA
mRNA sequenceShow/hide mRNA sequence
TTAGCAAAGAAAGTAAGAAGGTGAGAGAAGTAGAAGGGTAAGGCGAAGGATCCAATGCACATTATAACTCTCTCTCTCTTCTTCCCTTCAGCGTTCTCTCCTTCTTCAGT
TGAAACCGTTTCCAATCGCTTTCTCTTTTCTCTCTGACAAAATCACTTATTATTTATTCTCTCTTCCTTCCCCATTTTCTAACCTAATTCCAATCAAATCTTCCATTTCA
TCTTCCTTAATTTCTTTCTCTCCTTTCATTATGGCCTCAGAATTCCAAGAAATCTCCCTCACTCTGCCTGATCAGATTCCTTTCTCCCCCATTACGCCTCAATCCTTCCG
CCTCAACCAGATCGACTTTATTTTCTCTCTAAATACTGCTCCGCCTCAACCAGCCCATGCCCTCGCTCCAGCTGAGTCCATCTCCGCCGTTCACGATGACGACGATAACG
ACGGTTACAAAACCCCGATCTCTTCAGATCATAAGATTCCTGTGCTTCCACAGTGTCCGCCGGCTCCTAGAAGACCGAAACCGATCTCCTTGTCGAGAACCTTGTCGCCG
AGAGCTTCCGGCGTTCGCAGAGGTTTTCGAGTGTATATCGCTGACGAAATCGTTGATTCCATCTTCTGCTCCGATTTGCTGCATCAGAAGAGTAAGAAAGCTCGGAAGGA
CGATGATAATGGCGGTGAATGAAATTAATCTGTTGTTTTCTCTCGATTTAATTAATTAAGTCCGTTTCATAGCATTTTTCCTGTTTTTAGCTTTTTAAAATTAAGTTTCC
ATCCCTCTAAGGTTGGTCTGTTATATACGTCTTAATAATGTTT
Protein sequenceShow/hide protein sequence
MASEFQEISLTLPDQIPFSPITPQSFRLNQIDFIFSLNTAPPQPAHALAPAESISAVHDDDDNDGYKTPISSDHKIPVLPQCPPAPRRPKPISLSRTLSPRASGVRRGFR
VYIADEIVDSIFCSDLLHQKSKKARKDDDNGGE