CuGenDBv2

Gene ID	Clc04G09070
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	ClcChr04:22724694..22727456
RNA-Seq Expression	Clc04G09070
Synteny	Clc04G09070
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

2.3e-202

93.86

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ SPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLK+AEQVLDVLFDDYADY+RP R KT+ DA
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPL 
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
          AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

1.7e-205

94.35

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ SPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDVLFDDYADY+RP RVKT+  A
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

3.4e-206

93.87

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ SPST LD+TPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDVLFDDYADYRRP RVKTKDD 
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS
        EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAP PTDANPL+
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

1.4e-196

90.69

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ +PST LDSTPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA E+RAKDA+LRAFANKLKDAEQVLDVLFDDYADY+   RVKT DD 
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLC-STTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPL
        ENESLC STTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VESTEKTIEPMIEPPAP PTDANPL
Subjt:  ENESLC-STTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPL

Query:  SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        + +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+
Subjt:  SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

3.9e-210

95.33

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ SPSTSLDSTPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDVLFDDYADY+RP RVK KDDA
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEPPAP PTDANPLS
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP MDSLPVTRVDEPQLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

1.1e-202

93.86

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ SPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLK+AEQVLDVLFDDYADY+RP R KT+ DA
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPL 
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
          AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

8.2e-206

94.35

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ SPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDVLFDDYADY+RP RVKT+  A
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

8.2e-206

94.35

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ SPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDVLFDDYADY+RP RVKT+  A
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

1.6e-206

93.87

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ SPST LD+TPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDVLFDDYADYRRP RVKTKDD 
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS
        EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAP PTDANPL+
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

2.9e-195

90.2

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA
         SQTQ +PST LDSTPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA E+RAKDA+LRAFANKLKDAEQVLDVLFDDYADY+   RVKT DD 
Subjt:  ASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDA

Query:  ENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPL
        ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAP PTDANPL
Subjt:  ENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPL

Query:  SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        + +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+
Subjt:  SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

9.2e-05

29.17

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Query:  PSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLD-VLFDDYADYRRPHR-----------
        P    S ++TP+   ++++    +       + +L++   +Q    +I  EI  KD  +   A  LKD E  L+  L  D  +    +            
Subjt:  PSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLD-VLFDDYADYRRPHR-----------

Query:  VKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP
        +K  DDA +       V  ++   D++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A +DV  P
Subjt:  VKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

1.3e-139

65.21

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S + P P    + +PS++KEILS FN LQTQLFEAV+ELQEIL+LQD+KQK+A EI++KD+SL AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVL

Query:  DVLFDDYADYRRPHRVKTKDDAEN----ESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA
        D+L DDY+DYR+P R K ++D E+     S  STTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Subjt:  DVLFDDYADYRRPHRVKTKDDAEN----ESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA

Query:  VESTEKTIEPMIEPPAPTPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQ-LRPNALPGLHKP
        VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LP ++S+   R ++ Q +RP+   GLH+P
Subjt:  VESTEKTIEPMIEPPAPTPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQ-LRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

9.1e-141

65.21

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S + P P    + +PS++KEILS FN LQTQLFEAV+ELQEIL+LQD+KQK+A EI++KD+SL AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLASQTQPSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVL

Query:  DVLFDDYADYRRPHRVKTKDDAEN----ESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA
        D+L DDY+DYR+P R K ++D E+     S  STTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Subjt:  DVLFDDYADYRRPHRVKTKDDAEN----ESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA

Query:  VESTEKTIEPMIEPPAPTPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQ-LRPNALPGLHKP
        VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LP ++S+   R ++ Q +RP+   GLH+P
Subjt:  VESTEKTIEPMIEPPAPTPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQ-LRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTCAGCATCAAATTGTTCAATCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATC
CCACCACCAAAACCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCAT
TAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGCGGTTCTCTTCCCACTTTTCTTGCTTCTCAAACCCAGCCCTCACCCTCTACC
TCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTTCCGAGCTTCAGGAGATTCTTAATCTTCA
AGACTCTAAGCAGAAGATTGCTAATGAGATACGTGCTAAAGATGCTAGTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCCGAGCAGGTTCTTGATGTTTTGTTTGATG
ATTATGCGGATTATCGACGTCCTCATCGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCTTTGTGTTCAACTACAGTTGCATCCCAGTTGAGATTATCTGACATATTG
TCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCG
TGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCCACGCCAA
CAGATGCTAATCCTCTTTCTAATGTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCCGGAATGCCTGTCGAATTACCTAGAGAT
TTACCAATGCCCCCTCCGGGATGGAAGCCTGGGGACCCTGTGCCATTACCCTCAATGGACTCTCTTCCTGTTACTAGAGTGGATGAGCCACAATTGAGGCCTAATGCTCT
TCCAGGATTGCACAAACCCCCTGAGCCAATTCAAGTTAGGCATGTTCAATTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTG
AAGATGATGATTGA

mRNA sequence

Show/hide mRNA sequence

TTATCATCAGAAAAAAGAAGTATCATAATTCATAACTCCATGCGATTGTTCTTCTCTCTTTCTTGCATTGCTTCCCTCTCTCACACCAATTTACTTATTTTTTGTCTCTC
TTATCTTCACCTCTCTGCCTTTGCTGTGGCTACTGCTGATCGCCGATACACTTCCACTACCGCATTTTCTCTTCTCCTTTTATCTCCCTCACTTTCGAGACCTCAACGCT
GCCATGACTCAAATCTTCCATCGAAATAGGAGGCTGGAACGCAGGCAGTGAGTCTCAATTTCAGAGGCTAGAGCAGTAGATTTTTGGGTTCTCTGTTCACCGGCGGTGGA
GATTATGAATCGACGCGGGTAACTGTTTTTCTTTGAGATTTCGCAGTGGGTATTTGATTGAAGGTCGAATATGTTAAGGAGGTTTGAACAGATTTGAAGGGTTATAATCG
ATTGGGTTTTTTTTATTCCATCATTACTCTGTAATATTATATATCTTGGTGTTCTTATTCTTTAGATTGCATTCTGTTTTGGGCATATTAGAGTTCTCTTTTTCTGTATG
AACCCTAATACAATCCATTGAAACACACAACAATATGCTTCAGCATCAAATTGTTCAATCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACC
CTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAACCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCTCTTCCT
AGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGCGGTTCTCTTCCCACTTT
TCTTGCTTCTCAAACCCAGCCCTCACCCTCTACCTCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAG
CTGTTTCCGAGCTTCAGGAGATTCTTAATCTTCAAGACTCTAAGCAGAAGATTGCTAATGAGATACGTGCTAAAGATGCTAGTCTTCGTGCTTTTGCTAATAAGCTCAAG
GATGCCGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCGACGTCCTCATCGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCTTTGTGTTCAACTAC
AGTTGCATCCCAGTTGAGATTATCTGACATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGG
CACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATT
GAGCCAATGATTGAGCCTCCAGCTCCCACGCCAACAGATGCTAATCCTCTTTCTAATGTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTG
GAAACCCGGAATGCCTGTCGAATTACCTAGAGATTTACCAATGCCCCCTCCGGGATGGAAGCCTGGGGACCCTGTGCCATTACCCTCAATGGACTCTCTTCCTGTTACTA
GAGTGGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCCCCTGAGCCAATTCAAGTTAGGCATGTTCAATTGGATATTCTTGATCAAGATGATGAT
AGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGAGTGGATCAGCCTGAATCGTCAACTAATGCCCTAAATGTCCCCTTGTTGATGAAAGAGGTATA
TTTGTAGAGACCATCAAAAGGTTTGCCTAGAAGCAACAACTCTTAAAGAGTGTATAATAGTTCACTGATGAATGTATATGCATGAGGCTAAGCAATCTGCAGGTGGGAAG
GTTACATTTCATACTTTCAAACTTACATGTTACTGATGATGTGTTTTGCATTCACAGGCAACTTGAAACACACAAATCTTTTCAACTTTTTAATTTGAAAAGCTATCACT
CTCCTGACTCAAGTTCTTTTACTCTTCTTTGTTTTTAATTTTACTCTCTTAGAGCACCGGATGCATTCTAAACATGAGTAAACTGTGTTCTAACTTTTATACCATGACGT
AGAGTGCAGTATATAAGCTTCTAGGTCTCGTTGAATCAAATATTGATTCATTATTATGATTTGAAGGAAGTTGATTAGATTGTTATATGTTGGTGGCATGCAGAGTTGAA
TATTGTGTAGTCCAAGTTTTGATCTGATTCTGTATGTCATGACTTGGTACTTGTGAAAGAGTATGGTTTGAAATGAATATTGTTCTTGTAGAAGCTTTTTCTCCTGTGTT
GAAGAATATGAAGATTTCGGATGTTATTAAAAAAAAAACCTATTGTGTCTGCCTTGTTTTTTCTATGACATCTTTGGCTATTTTAGAGAAGAGGCTTCAGATTCTGAAGT
TTCGAAGCAGCTGGAAGATGGGCATTTGTGAATTTTAATCTAATATGAGGTTCATTTATTAAATGTAAGAACTTGTTATTTTTATACATGGTTGAATACATGTATGCGTA
GGCATGATTGTTATTTCTAAGCATCAGCTATTGCAGTTCTTTTTTCCTCAAAAAAATAAATTTTAGAAGTGCTTATGGGACTTTGCTAAGTAAGCGTCATAACTCATAAG
AGCTTGTTGGTTA

Protein sequence

Show/hide protein sequence

MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQPSPST
SLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDIL
SYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPTPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRD
LPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Clc04G09070 (gene) of Watermelon (cordophanus) v2 genome