| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0063818.1 RNA polymerase sigma factor sigF [Cucumis melo var. makuwa] | 1.2e-265 | 90.21 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SRSD DHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
Query: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
SYNA GEMLVKDEPENVIALAKKALSASKQAAL VDESELVGT+LDY+S DD SLSKEGRTV+STRLQ+RRSKKRK PKHVTTIHETSN
Subjt: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
Query: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Subjt: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
Query: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA
Subjt: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
Query: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
A GITVERLDKL+FMSRIPRSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Subjt: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Query: ERVRQLENRALYKLKRCCNSQGLGAYADILT
ERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: ERVRQLENRALYKLKRCCNSQGLGAYADILT
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| XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] | 4.1e-266 | 90.4 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SRSD DHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
Query: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
SYNA GEMLVKDEPENVIALAKKALSASKQAAL VDESELVGT+LDY+S DD SLSKEGRTV+STRLQDRRSKKRK PKHVTTIHETSN
Subjt: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
Query: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Subjt: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
Query: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA
Subjt: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
Query: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
A GITVERLDKL+FMSRIPRSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Subjt: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Query: ERVRQLENRALYKLKRCCNSQGLGAYADILT
ERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: ERVRQLENRALYKLKRCCNSQGLGAYADILT
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| XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo] | 4.1e-266 | 90.4 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SRSD DHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
Query: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
SYNA GEMLVKDEPENVIALAKKALSASKQAAL VDESELVGT+LDY+S DD SLSKEGRTV+STRLQDRRSKKRK PKHVTTIHETSN
Subjt: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
Query: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Subjt: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
Query: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA
Subjt: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
Query: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
A GITVERLDKL+FMSRIPRSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Subjt: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Query: ERVRQLENRALYKLKRCCNSQGLGAYADILT
ERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: ERVRQLENRALYKLKRCCNSQGLGAYADILT
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| XP_031742499.1 RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] | 9.4e-279 | 88.48 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDES
MEAGLNLLSSSSPFISRCHPRSFL PSCSS SSSSSSSSV MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDR+SQMTL+RRLIERSV IDE
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDES
Query: SRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGI
SR D DHL+WELKHQAVEWPGLLSSWP +QMEEYKISS+EK+SYNA GEMLVKDEPENVIALAKKALSASKQAAL VDE+ELVGT+LDY+S DD
Subjt: SRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGI
Query: YSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQ
SLSKEGRTV+STRLQDRRSKKRK PKHVTTI E SN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKARLQ
Subjt: YSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQ
Query: SQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKA
SQF REPTLVEWAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KA
Subjt: SQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKA
Query: IFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRR
IF+HSRTIRLPENVY LLGKVTEAKNYFVRAGNYKPSKEELAAR GITVER DKL+FMSRIPRSLQQ VWADQ+TTFQEITADSEVDTPDVSVERELMRR
Subjt: IFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRR
Query: HIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT
HIRNLL+ILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: HIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT
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| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 2.0e-289 | 92.62 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSD
MEAGLNLLSSSS FISRCHPRSFL PSC SSSSSSSSVSMFHEQA PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQ TLDRRLIERSVSIDE +RSD
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSD
Query: LDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLI
DHL+WE KHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAA VDESELVGTNLDYTSPDD
Subjt: LDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLI
Query: SSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFG
SLSKEGRTV+STRLQDRRSKKRK PKHVTTIHETSNS+GKDSRRKT ENFDPNDPLRLFLWGPETKKLLT +EES LIVQIQDLMIL+NVKARLQSQFG
Subjt: SSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFG
Query: REPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEH
REPTLVEWAEALGLTCQRLQSQL SFRISREKLINANLRMVVHIAKQYQGRGLSL DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEH
Subjt: REPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEH
Query: SRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRN
SRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAR GITVERLDKLLFMSRIPRSLQQ VW DQDTTFQEITADSE+DTPDVSVERELMRRHIRN
Subjt: SRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRN
Query: LLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT
LL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRC NSQGLGAYAD+LT
Subjt: LLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0KEQ6 RNA polymerase sigma factor | 4.5e-279 | 88.48 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDES
MEAGLNLLSSSSPFISRCHPRSFL PSCSS SSSSSSSSV MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDR+SQMTL+RRLIERSV IDE
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDES
Query: SRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGI
SR D DHL+WELKHQAVEWPGLLSSWP +QMEEYKISS+EK+SYNA GEMLVKDEPENVIALAKKALSASKQAAL VDE+ELVGT+LDY+S DD
Subjt: SRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGI
Query: YSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQ
SLSKEGRTV+STRLQDRRSKKRK PKHVTTI E SN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKARLQ
Subjt: YSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQ
Query: SQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKA
SQF REPTLVEWAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KA
Subjt: SQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKA
Query: IFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRR
IF+HSRTIRLPENVY LLGKVTEAKNYFVRAGNYKPSKEELAAR GITVER DKL+FMSRIPRSLQQ VWADQ+TTFQEITADSEVDTPDVSVERELMRR
Subjt: IFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRR
Query: HIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT
HIRNLL+ILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: HIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT
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| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 2.0e-266 | 90.4 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SRSD DHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
Query: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
SYNA GEMLVKDEPENVIALAKKALSASKQAAL VDESELVGT+LDY+S DD SLSKEGRTV+STRLQDRRSKKRK PKHVTTIHETSN
Subjt: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
Query: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Subjt: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
Query: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA
Subjt: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
Query: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
A GITVERLDKL+FMSRIPRSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Subjt: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Query: ERVRQLENRALYKLKRCCNSQGLGAYADILT
ERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: ERVRQLENRALYKLKRCCNSQGLGAYADILT
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| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 2.0e-266 | 90.4 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SRSD DHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
Query: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
SYNA GEMLVKDEPENVIALAKKALSASKQAAL VDESELVGT+LDY+S DD SLSKEGRTV+STRLQDRRSKKRK PKHVTTIHETSN
Subjt: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
Query: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Subjt: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
Query: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA
Subjt: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
Query: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
A GITVERLDKL+FMSRIPRSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Subjt: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Query: ERVRQLENRALYKLKRCCNSQGLGAYADILT
ERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: ERVRQLENRALYKLKRCCNSQGLGAYADILT
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| A0A5A7V893 RNA polymerase sigma factor sigF | 5.8e-266 | 90.21 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SRSD DHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQ
Query: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
SYNA GEMLVKDEPENVIALAKKALSASKQAAL VDESELVGT+LDY+S DD SLSKEGRTV+STRLQ+RRSKKRK PKHVTTIHETSN
Subjt: SYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNS
Query: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Subjt: RGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL
Query: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA
Subjt: RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELA
Query: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
A GITVERLDKL+FMSRIPRSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Subjt: ARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSK
Query: ERVRQLENRALYKLKRCCNSQGLGAYADILT
ERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: ERVRQLENRALYKLKRCCNSQGLGAYADILT
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| A0A5D3CAF4 RNA polymerase sigma factor | 7.5e-266 | 90.36 | Show/hide |
Query: MFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSY
MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SRSD DHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+SY
Subjt: MFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSY
Query: NAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRG
NA GEMLVKDEPENVIALAKKALSASKQAAL VDESELVGT+LDY+S DD SLSKEGRTV+STRLQ+RRSKKRK PKHVTTIHETSN RG
Subjt: NAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRG
Query: KDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRM
KDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRM
Subjt: KDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRM
Query: VVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAR
VVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAA
Subjt: VVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAR
Query: AGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKER
GITVERLDKL+FMSRIPRSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKER
Subjt: AGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKER
Query: VRQLENRALYKLKRCCNSQGLGAYADILT
VRQLENRALYKLKRCCNSQGLGAYAD+LT
Subjt: VRQLENRALYKLKRCCNSQGLGAYADILT
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 3.8e-65 | 38.2 | Show/hide |
Query: VKSTRLQDRRSKKRK-KPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEW
V+STR +R++++ K K + I +R ++ D NDPLR + KLLT +EE L IQDL+ LE ++ L + GR+PT +W
Subjt: VKSTRLQDRRSKKRK-KPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEW
Query: AEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPE
A A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+QEG GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP
Subjt: AEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPE
Query: NVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPK
++ +V EA+ P EE+A G++++RL +L + PRSL Q + +Q+ E+ AD E T + + +E MR+ + +L+ L +
Subjt: NVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPK
Query: ERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
E+++IR RFG+EDG+ KTL EIG M G+S+ERVRQ+E+ A KLK + L Y
Subjt: ERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
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| P26683 RNA polymerase sigma factor SigA | 5.1e-62 | 39.44 | Show/hide |
Query: ETSNSRGKDSRRKT--SENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISRE
+ + + SRR+T + D +RL+L +LL A EE L +I DL+ LE V+ RL + R+P EWAEA+ L + +LH R +++
Subjt: ETSNSRGKDSRRKT--SENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISRE
Query: KLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK
K++ +NLR+VV IAK+Y RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + K
Subjt: KLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK
Query: PSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIG
P++EE+A R +T+E+L + +++P SL+ + ++D+ + +S+ +TP+ V + L+R + +L+ LSP+ER ++RLR+G++DG+ KTL EIG
Subjt: PSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIG
Query: NMFGLSKERVRQLENRALYKLK
+F +++ER+RQ+E +AL KL+
Subjt: NMFGLSKERVRQLENRALYKLK
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| P38023 RNA polymerase sigma factor SigA1 | 9.1e-59 | 37.29 | Show/hide |
Query: VKSTRLQDRRSKKRKKPKHV----TTIHETSNSRGKDSRRKTSENFD-------------PNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVK
+K + +RS ++K V TTI T++ D E+ D D +RL+L +LL A EE L QI DL+ LE ++
Subjt: VKSTRLQDRRSKKRKKPKHV----TTIHETSNSRGKDSRRKTSENFD-------------PNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVK
Query: ARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQS
L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAK+Y RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+
Subjt: ARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQS
Query: IRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQE-ITADSEVDTPDVSVER
I +AI + SRTIRLP ++Y + ++ + + KP++EE+A R +T+E+L + +++P SL+ + ++D+ + I AD E TP+ V +
Subjt: IRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQE-ITADSEVDTPDVSVER
Query: ELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
L+R + +L+ LSP+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E +AL KL+
Subjt: ELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
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| Q31ME3 RNA polymerase sigma factor SigA2 | 1.6e-55 | 39.5 | Show/hide |
Query: TSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAK
+S + P D +R +L +LLTA+EE Q+Q LM+L + + L+ + G EP+ EWA A+ L + L Q+ + ++ K+I ANLR+VV IAK
Subjt: TSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAK
Query: QYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVE
+YQ R + DL+QEG+LGL + VEKF P G +F+TYAYWWIRQ+I +AI + SRTIRLP ++ L K+ + + + + ELA + +E
Subjt: QYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVE
Query: RLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLEN
++ + + M+R P SL V QDT QE+ D E +P VE+E +RR +RNL+ L+P+++ +I LR+G+++G +L ++G +S+ERVR+LE
Subjt: RLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLEN
Query: RALYKLKRCCNSQGLGAYA
+A+ L+R S+ L YA
Subjt: RALYKLKRCCNSQGLGAYA
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 1.6e-148 | 54.06 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATP-----------ARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIER
MEA NL+SSS F ++ H + SS SS SSV M H+Q T +R+F S LSQE E RP S L+DDRTSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATP-----------ARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIER
Query: SVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPD
V SSR D + +L H W L+S S E K+ +V L E +V+ALA+KALSASKQAAL VD++E N D
Subjt: SVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPD
Query: DLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILE
L+ S SL ++G V+S R +RR+K R+ PK E + +++K + D +D L+LFLWGPETK+LLTA+EE+ LI IQ L+ LE
Subjt: DLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILE
Query: NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWI
VK +L+SQ G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWI
Subjt: NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWI
Query: RQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSV
RQSIRK+IF++SRTIRLPENVY LLGKV+EA+ V+ GNY+PSKEELA G++ E+LDKLL+ +R P S+QQ +W+DQDTTFQEIT DS ++TP +SV
Subjt: RQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSV
Query: ERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADIL
++LMR H+RNLLN+LSPKERRII+LRFGI+ GK+++L EIG ++GLSKERVRQLE+RALY+LK+ NS GL AYAD+L
Subjt: ERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADIL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 2.7e-66 | 38.2 | Show/hide |
Query: VKSTRLQDRRSKKRK-KPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEW
V+STR +R++++ K K + I +R ++ D NDPLR + KLLT +EE L IQDL+ LE ++ L + GR+PT +W
Subjt: VKSTRLQDRRSKKRK-KPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEW
Query: AEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPE
A A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+QEG GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP
Subjt: AEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPE
Query: NVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPK
++ +V EA+ P EE+A G++++RL +L + PRSL Q + +Q+ E+ AD E T + + +E MR+ + +L+ L +
Subjt: NVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPK
Query: ERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
E+++IR RFG+EDG+ KTL EIG M G+S+ERVRQ+E+ A KLK + L Y
Subjt: ERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
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| AT1G64860.1 sigma factor A | 1.4e-30 | 27.93 | Show/hide |
Query: STRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEA
S R + +KK+ HV + + S+ + +R ++ G ++ +L+ E L +I+ + L++ K+RL+ + G EP+ + A +
Subjt: STRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEA
Query: LGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVY
L ++ LQ+ L ++REKL +N+R+V+ IA++Y G + DL+Q G +GL++ +EKF G R +TY YWWIRQ + +A+ ++SRT+RLP +++
Subjt: LGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVY
Query: GLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERL----DKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVD-TPDVSVERELMRRHIRNLLN-IL
LG + AK G PS + +A ++ +++ + + + + R + T AD+ ++ P + ++ + L++ L
Subjt: GLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERL----DKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVD-TPDVSVERELMRRHIRNLLN-IL
Query: SPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGA
+E+ IIRL +G+ D + T +I GLS+ERVRQ+ AL KLK + + A
Subjt: SPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGA
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.1e-149 | 54.06 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATP-----------ARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIER
MEA NL+SSS F ++ H + SS SS SSV M H+Q T +R+F S LSQE E RP S L+DDRTSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATP-----------ARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIER
Query: SVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPD
V SSR D + +L H W L+S S E K+ +V L E +V+ALA+KALSASKQAAL VD++E N D
Subjt: SVSIDESSRSDLDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALFVDESELVGTNLDYTSPD
Query: DLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILE
L+ S SL ++G V+S R +RR+K R+ PK E + +++K + D +D L+LFLWGPETK+LLTA+EE+ LI IQ L+ LE
Subjt: DLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILE
Query: NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWI
VK +L+SQ G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWI
Subjt: NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWI
Query: RQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSV
RQSIRK+IF++SRTIRLPENVY LLGKV+EA+ V+ GNY+PSKEELA G++ E+LDKLL+ +R P S+QQ +W+DQDTTFQEIT DS ++TP +SV
Subjt: RQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSV
Query: ERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADIL
++LMR H+RNLLN+LSPKERRII+LRFGI+ GK+++L EIG ++GLSKERVRQLE+RALY+LK+ NS GL AYAD+L
Subjt: ERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADIL
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| AT3G53920.1 RNApolymerase sigma-subunit C | 4.5e-37 | 27.08 | Show/hide |
Query: SLISSLSKEGRTVKSTRLQ-----DRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVK
S+ S LS V +T Q RR K+K + T S R T N D R + + +++ ++ E+ + ++ + +E ++
Subjt: SLISSLSKEGRTVKSTRLQ-----DRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESALIVQIQDLMILENVK
Query: ARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQS
+L+ + G+ +L WA A G+ + L LH R++L+ + +V+ +A+ Y+G G++ DL+Q G +G+++ E+F G +F+TY +WIR+S
Subjt: ARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQS
Query: IRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK-PSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVER
+ + H+R + +P ++ + + +A+ + K + EE+A G +V+++ ++ S+ + V T F E T D+ +++P+ +V R
Subjt: IRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK-PSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVER
Query: ELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
+ RR I +LL L P+E++++ LR+G++D + K+L EIG + +SKE +R++E RA+ KL+ N++ L Y
Subjt: ELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
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| AT5G13730.1 sigma factor 4 | 4.6e-42 | 35.1 | Show/hide |
Query: GPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEG
G L+ EE L + +++ LEN+ ++ E V A G + L + +REK+ R+VV IA YQG+GL+L DL+QEG
Subjt: GPETKKLLTAQEESALIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEG
Query: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQ
S+GL++ E+F P G + +TY YWWI+Q+I +AI SR ++LP +++ L KV EA N R +PS EE+A + V + + SR P SL
Subjt: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQ
Query: QCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLG
+ + T QEI + P+ V+RE M+ I LL L+ +E R++ L FG+ + EIG LS+ERVRQ+ AL KL+ N L
Subjt: QCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLG
Query: AY
Y
Subjt: AY
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