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Clc04G10540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G10540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationClcChr04:24086839..24088077
RNA-Seq ExpressionClc04G10540
SyntenyClc04G10540
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0097525 - spliceosomal snRNP complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034098 - Small nuclear ribonucleoprotein G
IPR044641 - Sm-like protein Lsm7/SmG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3465078.1 putative small nuclear ribonucleoprotein G [Gossypium australe]1.0e-2864Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ    +        + H +++   +L              + F    KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNRMQ
        DIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  DIGMVVIRGNSVVTVEALEPVNRMQ

KHN02209.1 Putative small nuclear ribonucleoprotein G [Glycine soja]3.0e-2865.04Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQSK                                  D  F   LI KLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEK 
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNR
        DIGMVVIRGNSVVTVEALEPVNR
Subjt:  DIGMVVIRGNSVVTVEALEPVNR

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]3.0e-2863.2Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ                                             +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNRMQ
        DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  DIGMVVIRGNSVVTVEALEPVNRMQ

XP_023517274.1 probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]6.7e-2861.6Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ                                             +K+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNRMQ
        DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  DIGMVVIRGNSVVTVEALEPVNRMQ

XP_042945373.1 probable small nuclear ribonucleoprotein G isoform X1 [Carya illinoinensis]2.3e-2865.35Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFL----LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNG
        MSRSGQPPDLKKYMDKKLQ         L  SLS              F  ++   LQ RF     L+VKLNANR+V+GTLRGFDQFMNLV+DNTVEVNG
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFL----LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNG

Query:  NEKTDIGMVVIRGNSVVTVEALEPVNR
        N+K DIGMVVIRGNSVVTVEALEPVNR
Subjt:  NEKTDIGMVVIRGNSVVTVEALEPVNR

TrEMBL top hitse value%identityAlignment
A0A0A0KHH9 Small nuclear ribonucleoprotein G1.4e-2863.2Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ                                             +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNRMQ
        DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  DIGMVVIRGNSVVTVEALEPVNRMQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G1.4e-2863.2Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ                                             +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNRMQ
        DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  DIGMVVIRGNSVVTVEALEPVNRMQ

A0A4D9C622 Small nuclear ribonucleoprotein G1.4e-2864.8Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQS F             L    QL +E       +         +++KLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEKT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNRMQ
        DIGMVVIRGNSVVTVEALEPV+R Q
Subjt:  DIGMVVIRGNSVVTVEALEPVNRMQ

A0A5B6V7F1 Small nuclear ribonucleoprotein G5.0e-2964Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ    +        + H +++   +L              + F    KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNRMQ
        DIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  DIGMVVIRGNSVVTVEALEPVNRMQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G1.4e-2863.2Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ                                             +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNRMQ
        DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  DIGMVVIRGNSVVTVEALEPVNRMQ

SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G5.3e-2858.54Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ                                             +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNR
        DIGMVVIRGNS+VTVEALEPV R
Subjt:  DIGMVVIRGNSVVTVEALEPVNR

P24715 Probable small nuclear ribonucleoprotein G3.6e-2454.55Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MS SGQPP LKKYMDK+LQ                                             + L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK 
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPV
        DIGMVVIRGNSVVTVEALEPV
Subjt:  DIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G1.1e-0958.33Show/hide
Query:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        L +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q54RX0 Probable small nuclear ribonucleoprotein G6.5e-1058.62Show/hide
Query:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE-VNGNEKTDIGMVVIRGNSVVTVEALE
        L +KLN NR V G LRGFD FMN+ + +TVE V+  EK +IGMV+IRGNS++ +E LE
Subjt:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE-VNGNEKTDIGMVVIRGNSVVTVEALE

Q9VXE0 Probable small nuclear ribonucleoprotein G4.5e-1161.67Show/hide
Query:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV
        +++KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Subjt:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hitse value%identityAlignment
AT2G23930.1 probable small nuclear ribonucleoprotein G3.8e-2958.54Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ                                             +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNR
        DIGMVVIRGNS+VTVEALEPV R
Subjt:  DIGMVVIRGNSVVTVEALEPVNR

AT2G23930.2 probable small nuclear ribonucleoprotein G3.6e-2488.52Show/hide
Query:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        L +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

AT3G11500.1 Small nuclear ribonucleoprotein family protein4.9e-2957.72Show/hide
Query:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT
        MSRSGQPPDLKKYMDKKLQ                                             +KLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KT
Subjt:  MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT

Query:  DIGMVVIRGNSVVTVEALEPVNR
        DIGMVVIRGNS+VTVEALEPV R
Subjt:  DIGMVVIRGNSVVTVEALEPVNR

AT3G14080.1 Small nuclear ribonucleoprotein family protein4.2e-0442.62Show/hide
Query:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE--VNGNEKTDI--GMVVIRGNSVVTVEALE
        L+V L   R ++GTLR FDQF N V++   E  + G +  DI  G+ VIRG +VV +  L+
Subjt:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE--VNGNEKTDI--GMVVIRGNSVVTVEALE

AT3G14080.2 Small nuclear ribonucleoprotein family protein4.2e-0442.62Show/hide
Query:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE--VNGNEKTDI--GMVVIRGNSVVTVEALE
        L+V L   R ++GTLR FDQF N V++   E  + G +  DI  G+ VIRG +VV +  L+
Subjt:  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE--VNGNEKTDI--GMVVIRGNSVVTVEALE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAATACATGGACAAAAAGCTTCAGAGTAAGTTCTGTTCCTCAGGAGCTTCTTTATCCTTTTCGTTGTCGCATTTGTT
TTCTCTGGCTCAGTTAATTCTGGAAATGTTTGTTTTCTTTGAAGTTATGCCATTTGATTTGCAATTTCGTTTTCTATTGATTGTAAAACTCAATGCTAATCGCTTGGTAA
TTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAAT
AGTGTTGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA
mRNA sequenceShow/hide mRNA sequence
GCTCGATTAATTAGGGTTTTTTCCATCTCTCTGACCTTTGTTCTCCAAAAACCTCTTAACATCTCTTTCGTTCGTTCTTCACCATGAGTAGGTCAGGACAGCCTCCGGAT
CTCAAAAAATACATGGACAAAAAGCTTCAGAGTAAGTTCTGTTCCTCAGGAGCTTCTTTATCCTTTTCGTTGTCGCATTTGTTTTCTCTGGCTCAGTTAATTCTGGAAAT
GTTTGTTTTCTTTGAAGTTATGCCATTTGATTTGCAATTTCGTTTTCTATTGATTGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAAT
TTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTTGTCACTGTTGAAGCACTTGAA
CCTGTAAACAGGATGCAGTGATTGTGAACTTATTCTGTTTGAAGTTGGTTGGATTCTTGCTGCTGATCTGTTTTATAGATTGAGCGGATAATAATTCCAGCAATGGGGTT
TCTGTATTATTATGGGATGGAGAGATTCGTTGCATTAGGTGAGACTTTTCTTACCAAACCTTTCATTCGGTCTCTGTTACAG
Protein sequenceShow/hide protein sequence
MSRSGQPPDLKKYMDKKLQSKFCSSGASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGN
SVVTVEALEPVNRMQ