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Clc04G10705 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G10705
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSecoisolariciresinol dehydrogenase
Genome locationClcChr04:24234253..24237854
RNA-Seq ExpressionClc04G10705
SyntenyClc04G10705
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9664907.1 hypothetical protein SADUNF_Sadunf16G0066700 [Salix dunnii]8.7e-0443.88Show/hide
Query:  SAPMVHGR-SCTLDSPTKPSGDKLLKVPPTFTVSGTTCKACPPSTNATVTTYIADYYVFKLPFTVAKTGSFVLCGAAACPPFPRIKAEKCPAPAHTGP
        +APM  GR S ++   T+PS   L   PP   VSG T  A P ST  T TTY A   + ++    A+ GS V  G AACPPFP I A   P  A  GP
Subjt:  SAPMVHGR-SCTLDSPTKPSGDKLLKVPPTFTVSGTTCKACPPSTNATVTTYIADYYVFKLPFTVAKTGSFVLCGAAACPPFPRIKAEKCPAPAHTGP

KAG7027179.1 hypothetical protein SDJN02_11190, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-6550.15Show/hide
Query:  AILCEKKPKSSAPMVHGRSCTLDSPTKPSGDKLLKVPPTFTVSGTTCKACPPSTNATVTTYIADYYVFKLPFTVAKTGSFVLCGAAACPPFPRIKAEKCP
        AI C+KKPKSSAPMVHGRSCTLDSP                                               TVA+TGSFVLCGAAACPPFPRIKAEKCP
Subjt:  AILCEKKPKSSAPMVHGRSCTLDSPTKPSGDKLLKVPPTFTVSGTTCKACPPSTNATVTTYIADYYVFKLPFTVAKTGSFVLCGAAACPPFPRIKAEKCP

Query:  APAHTGPGLEAMTPVGKDGCTCNAKIPSMSSRASSSFDKLHYTLLQAGKLASQFPSNNSIFKQTLAILQERNTNILDCILGIEKTIDMYLKRKGIHVCSE
        APAHTGPGLEAMTPV                    + DKLHYTLL AGKL SQFPSNN+I+K+                         YLKRKGIHVCS+
Subjt:  APAHTGPGLEAMTPVGKDGCTCNAKIPSMSSRASSSFDKLHYTLLQAGKLASQFPSNNSIFKQTLAILQERNTNILDCILGIEKTIDMYLKRKGIHVCSE

Query:  TKNRCRGRRNR----------IPSNGSHHSSLGNRPLVTDSKRVELRPHDSGYSWILLLTPFIHSMNSLSLAKPNRFWVSEWSSDPSPPCSAT--NGPHK
        +KNR R RR R           P NGSHHSSLGNRPLVTD+++VELRPH+                NS SLAKP+ F VSE SS+PSPPCS +  +G H 
Subjt:  TKNRCRGRRNR----------IPSNGSHHSSLGNRPLVTDSKRVELRPHDSGYSWILLLTPFIHSMNSLSLAKPNRFWVSEWSSDPSPPCSAT--NGPHK

Query:  AIPNTSIQQNDWKLI--PPPLISKT
        A P TSIQQN+   +  PPP ISKT
Subjt:  AIPNTSIQQNDWKLI--PPPLISKT

TrEMBL top hitse value%identityAlignment
A0A2R6QVW5 Secoisolariciresinol dehydrogenase9.4e-0456.14Show/hide
Query:  SFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPVGKDGCTCNAKIPSMSSRASS
        S V C  A CPPFPRI A   P PA  G GLE M PVGK G  CN K+    SRA S
Subjt:  SFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPVGKDGCTCNAKIPSMSSRASS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTCATGGCCACAGCAGCGTGTAGAGCTGCTCCTATTGGAAGGGCTTCTTCATCAAGGACAAAGTGCGGTGAGTGCACTGGCCGATTTGATCCCAGAGTCTCATTC
CCTGTCCCAATCACCTGCAATCCTCTGTGAGAAGAAGCCAAAATCTTCAGCTCCCATGGTCCATGGAAGGAGTTGCACATTGGATTCTCCAACGAAACCCTCAGGCGACA
AGCTCCTGAAAGTTCCCCCAACTTTCACAGTTTCGGGAACCACATGTAAAGCTTGTCCTCCGTCAACAAATGCAACCGTCACCACCTACATTGCTGATTATTATGTTTTC
AAGTTGCCTTTCACTGTTGCCAAAACTGGGTCCTTCGTCTTATGTGGGGCTGCTGCATGTCCACCCTTTCCCCGGATCAAGGCTGAAAAGTGTCCTGCTCCAGCACATAC
TGGACCCGGCCTAGAGGCTATGACACCGGTTGGTAAGGATGGCTGTACGTGCAATGCAAAGATTCCATCAATGTCATCAAGGGCATCTTCTTCATTTGATAAGCTCCATT
ACACTCTTCTCCAGGCTGGAAAACTAGCTTCACAGTTCCCTTCAAATAATAGCATATTCAAACAAACCCTGGCGATTTTACAAGAGAGGAATACAAATATTCTAGATTGC
ATTCTTGGAATTGAAAAGACAATAGACATGTACCTGAAGAGGAAGGGCATCCATGTCTGCTCTGAGACCAAAAACAGGTGTAGAGGAAGAAGAAATAGAATCCCCTCTAA
TGGAAGCCACCACTCCAGTCTTGGCAACAGGCCATTGGTAACTGATTCCAAGCGAGTCGAGCTCAGACCTCACGACTCTGGATACTCATGGATTCTCCTTCTAACTCCTT
TTATCCATTCCATGAACTCCCTTTCCCTCGCCAAACCCAATAGATTTTGGGTCAGTGAGTGGAGCTCCGACCCATCTCCGCCGTGCTCCGCCACCAACGGTCCCCACAAG
GCCATCCCAAACACCAGCATCCAACAAAATGATTGGAAGCTCATACCGCCGCCTCTCATCTCAAAAACAAAGGTGCTTTGTCAGCTGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGTCATGGCCACAGCAGCGTGTAGAGCTGCTCCTATTGGAAGGGCTTCTTCATCAAGGACAAAGTGCGGTGAGTGCACTGGCCGATTTGATCCCAGAGTCTCATTC
CCTGTCCCAATCACCTGCAATCCTCTGTGAGAAGAAGCCAAAATCTTCAGCTCCCATGGTCCATGGAAGGAGTTGCACATTGGATTCTCCAACGAAACCCTCAGGCGACA
AGCTCCTGAAAGTTCCCCCAACTTTCACAGTTTCGGGAACCACATGTAAAGCTTGTCCTCCGTCAACAAATGCAACCGTCACCACCTACATTGCTGATTATTATGTTTTC
AAGTTGCCTTTCACTGTTGCCAAAACTGGGTCCTTCGTCTTATGTGGGGCTGCTGCATGTCCACCCTTTCCCCGGATCAAGGCTGAAAAGTGTCCTGCTCCAGCACATAC
TGGACCCGGCCTAGAGGCTATGACACCGGTTGGTAAGGATGGCTGTACGTGCAATGCAAAGATTCCATCAATGTCATCAAGGGCATCTTCTTCATTTGATAAGCTCCATT
ACACTCTTCTCCAGGCTGGAAAACTAGCTTCACAGTTCCCTTCAAATAATAGCATATTCAAACAAACCCTGGCGATTTTACAAGAGAGGAATACAAATATTCTAGATTGC
ATTCTTGGAATTGAAAAGACAATAGACATGTACCTGAAGAGGAAGGGCATCCATGTCTGCTCTGAGACCAAAAACAGGTGTAGAGGAAGAAGAAATAGAATCCCCTCTAA
TGGAAGCCACCACTCCAGTCTTGGCAACAGGCCATTGGTAACTGATTCCAAGCGAGTCGAGCTCAGACCTCACGACTCTGGATACTCATGGATTCTCCTTCTAACTCCTT
TTATCCATTCCATGAACTCCCTTTCCCTCGCCAAACCCAATAGATTTTGGGTCAGTGAGTGGAGCTCCGACCCATCTCCGCCGTGCTCCGCCACCAACGGTCCCCACAAG
GCCATCCCAAACACCAGCATCCAACAAAATGATTGGAAGCTCATACCGCCGCCTCTCATCTCAAAAACAAAGGTGCTTTGTCAGCTGGAATGAAGAGGAGTTGACAACCA
AATTGGGCTTCTTTGGGAATTTTCATATTGAGATTGAGACTATTTGGTATTCTAAAATATCCTTGTTTTTAACATCATTTTAAATGATGTTTATTTTCATTCCTTTTTTA
GGGGTGAATTTCGTTTTTTCAATGCCAAATTCAAGAGAAAGAACTTTCATTGTGGAGTCCAATCATGAATTTTTCTTCTTTTATTTTTGTACATAAATTCAAATTCTCAT
CAAGTTTCATTGGACTTTCTTTTCTTTAATATAGTTGAGAGAAAAAG
Protein sequenceShow/hide protein sequence
MLSWPQQRVELLLLEGLLHQGQSAVSALADLIPESHSLSQSPAILCEKKPKSSAPMVHGRSCTLDSPTKPSGDKLLKVPPTFTVSGTTCKACPPSTNATVTTYIADYYVF
KLPFTVAKTGSFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPVGKDGCTCNAKIPSMSSRASSSFDKLHYTLLQAGKLASQFPSNNSIFKQTLAILQERNTNILDC
ILGIEKTIDMYLKRKGIHVCSETKNRCRGRRNRIPSNGSHHSSLGNRPLVTDSKRVELRPHDSGYSWILLLTPFIHSMNSLSLAKPNRFWVSEWSSDPSPPCSATNGPHK
AIPNTSIQQNDWKLIPPPLISKTKVLCQLE