CuGenDBv2

Gene ID	Clc04G10966
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DDE Tnp4 domain-containing protein
Genome location	ClcChr04:24568133..24574911
RNA-Seq Expression	Clc04G10966
Synteny	Clc04G10966
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR040344 - Uncharacterized protein At3g17950-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYJ99038.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

4.9e-95

92.42

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Query:  SNTSLSFSIQMLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPA
        S+ SL    +MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT   GGGSRKSKKTKRKTTT PA
Subjt:  SNTSLSFSIQMLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPA

Query:  LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNGRSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Subjt:  LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

XP_008465627.2 PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis melo]

1.1e-94

93.4

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Query:  FSIQ-----MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPAL
        FSIQ     MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT   GGGSRKSKKTKRKTTT PAL
Subjt:  FSIQ-----MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPAL

Query:  VADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        VADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNGRSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Subjt:  VADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

XP_022924210.1 uncharacterized protein At3g17950 [Cucurbita moschata]

1.9e-94

96.28

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAA GGGSRKSKK KRKTT  PALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV+ DQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

XP_031739825.1 uncharacterized protein At3g17950 [Cucumis sativus]

3.8e-95

91.63

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Query:  SNTSLSFSIQ-----MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKT
        SN +LSFSIQ     MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT   GGGSRKSKKTKRKT
Subjt:  SNTSLSFSIQ-----MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKT

Query:  TTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSG
        T  PALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVA DQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLTGICSG
Subjt:  TTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSG

Query:  GAG
        GAG
Subjt:  GAG

XP_038895169.1 uncharacterized protein At3g17950 [Benincasa hispida]

1.7e-95

96.81

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AATAA GGGSRKSKKTKRKT+T PALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPA+TE+DTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQI1 DDE Tnp4 domain-containing protein

5.9e-94

91.41

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Query:  SNTSLSFSIQMLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPA
        S+ SL    +MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT   GGGSRKSKKTKRKTT  PA
Subjt:  SNTSLSFSIQMLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPA

Query:  LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVA DQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLTGICSGGAG
Subjt:  LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

A0A1S3CPP8 uncharacterized protein At3g17950 isoform X1

5.3e-95

93.4

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Query:  FSIQ-----MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPAL
        FSIQ     MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT   GGGSRKSKKTKRKTTT PAL
Subjt:  FSIQ-----MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPAL

Query:  VADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        VADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNGRSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Subjt:  VADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

A0A1S4DUB1 uncharacterized protein At3g17950 isoform X2

1.5e-94

95.74

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT   GGGSRKSKKTKRKTTT PALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNGRSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

A0A5D3BLI7 Putative nuclease HARBI1

2.4e-95

92.42

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Query:  SNTSLSFSIQMLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPA
        S+ SL    +MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT   GGGSRKSKKTKRKTTT PA
Subjt:  SNTSLSFSIQMLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPA

Query:  LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNGRSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Subjt:  LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

A0A6J1E8Y2 uncharacterized protein At3g17950

9.1e-95

96.28

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAA GGGSRKSKK KRKTT  PALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV+ DQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

SwissProt top hits

e value

%identity

Alignment

Q6DR24 Uncharacterized protein At3g17950

3.4e-38

51.71

Show/hide

Query:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDD-
        PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A + A+   +R++ + KR  +        R+R+WWR CRDD 
Subjt:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDD-

Query:  ------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSLTGIC
              G+       K +SLGE+LEVERRFGD A Y +A  +LE  V     DQQ     R+LFADGRVLPPA  E    E T  A +LCRF VSLTGIC
Subjt:  ------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSLTGIC

Query:  SGGAG
        SGG G
Subjt:  SGGAG

Arabidopsis top hits

e value

%identity

Alignment

AT3G17950.1 unknown protein

2.4e-39

51.71

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Query:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDD-
        PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A + A+   +R++ + KR  +        R+R+WWR CRDD 
Subjt:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDD-

Query:  ------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSLTGIC
              G+       K +SLGE+LEVERRFGD A Y +A  +LE  V     DQQ     R+LFADGRVLPPA  E    E T  A +LCRF VSLTGIC
Subjt:  ------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSLTGIC

Query:  SGGAG
        SGG G
Subjt:  SGGAG

AT3G17950.2 unknown protein

8.3e-24

44.77

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Query:  MGVSFPA---ITFRVPSQNR-DQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRFGDG
        MG SF A   + FR  S+       A + A+   +R++ + KR  +        R+R+WWR CRDD       G+       K +SLGE+LEVERRFGD 
Subjt:  MGVSFPA---ITFRVPSQNR-DQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRFGDG

Query:  AFYGNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSLTGICSGGAG
        A Y +A  +LE  V     DQQ     R+LFADGRVLPPA  E    E T  A +LCRF VSLTGICSGG G
Subjt:  AFYGNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSLTGICSGGAG

AT5G02440.1 unknown protein

3.9e-05

52.73

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Query:  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGV-SFPAITFRVPSQNRDQHAAA
        SP+ SS SSSDLD++S GSFF DRS +LG L+G+ SF  ++ R      DQ  AA
Subjt:  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGV-SFPAITFRVPSQNRDQHAAA

Sequences

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CDS sequence

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ATGGGTGCATGCATTCTTTTGGAGGGAAGCCGAATTCTTGAGTACTGCTGCCAAGGAAGCAACACCAGTCTCAGCTTCTCTATACAGATGTTGAATCCGGCCAACGATCT
GTTACCGCCGCCGTCTTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACCGAGTCGACGGGTTCGTTCTTCCATGACAGGAGCACGAGCTTGGGAACTCTAA
TGGGGGTCAGCTTTCCGGCGATTACTTTCCGAGTGCCCTCCCAGAACAGAGATCAACACGCCGCCGCGACTGCCGCCACAGGCGGCGGTTCTCGGAAAAGCAAGAAGACG
AAGAGAAAAACGACAACGGTGCCGGCACTGGTTGCAGATCGGAAACGGCGATGGTGGAGGCTTTGCAGGGATGACGGCGTTAAGCCGGCGTCTCTGGGTGAGTTTCTCGA
AGTAGAACGGAGATTTGGGGATGGTGCTTTCTACGGCAACGCGGTGGATCTGGAAGGCGTGGTTGCGACGGATCAACAGAGGAATGGCCGGTCTTTGTTCGCAGATGGAA
GAGTTCTTCCGCCGGCACAAACCGAGGAAGATACATCGGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTTACCGGAATATGCAGCGGCGGTGCCGGTTAA

mRNA sequence

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Protein sequence

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MGACILLEGSRILEYCCQGSNTSLSFSIQMLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKT
KRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

Clc04G10966 (gene) of Watermelon (cordophanus) v2 genome