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Clc04G11290 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G11290
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal protein S24/S35, mitochondrial
Genome locationClcChr04:24856318..24858420
RNA-Seq ExpressionClc04G11290
SyntenyClc04G11290
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019929.1 hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma]5.8e-5373.62Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+SP L+T RSGPLL  FSV      RCYSSGNDKYNGLNSTT ENKDSLV+DD+S EELK KI++FYEGD++SLP IFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH D D+ELMKEIR++MPG+VEDFKDE+Y SDLS ELNE+DEE ++ S  EEEDRR+
Subjt:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDRRI

XP_008461340.1 PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo]2.0e-5375.62Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR
        MKRA+WGAVFNVCSRTLSVSPPLRTFRS PLLS FSV TLRCYSSGNDKYN LNST  +NKDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR

Query:  KLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETEDSSDYEEEDRRI
        KLSGKHED D+ELMKEIR++MPG++EDFK E+Y S+L++        + +SD EEED+RI
Subjt:  KLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETEDSSDYEEEDRRI

XP_022924024.1 uncharacterized protein LOC111431572 [Cucurbita moschata]1.5e-5374.85Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+SP L+T RSGPLL  FSV      RCYSSGNDKYNGLNSTT ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH D D+ELMKEIR+++PG+VEDFKDE+Y SDLS ELNE+DEE ++ S  EEEDRR+
Subjt:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDRRI

XP_023519890.1 uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]1.8e-5476.07Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTL---RCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF VCSR +S+SP L+T RSGPLL  FSV      RCYS+GNDKYNGLNSTT ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTL---RCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH D D+ELMKEIR++MPG+VEDFKDE+Y SDLS ELNETDEE E+    EEEDRR+
Subjt:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDRRI

XP_038894045.1 uncharacterized protein LOC120082798 [Benincasa hispida]1.1e-5679.63Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRK
        MKRA+ GAVFNV SRTLSVSPPLRTFRSG LLS FS  +LR YSSGNDKYNGLNST  +NKDSL+EDDVSTEELK KI+KFYEGDV+SLPTIFEAILKRK
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRK

Query:  LSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETE---DSSDYEEEDRRI
        LSGKHEDDD+E+MKEIR++MPGQVED   E+Y SDLSELNET EE E   DSSD E+EDRR+
Subjt:  LSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETE---DSSDYEEEDRRI

TrEMBL top hitse value%identityAlignment
A0A0A0LT17 Uncharacterized protein2.9e-5075.16Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR
        MKRA+WGAVF+V S TLSVSPPLRTFRS PLLS FSV TLR YSSGNDKYN LNST  +NKDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR

Query:  KLSGKHEDDDNELMKEIREQMPGQVEDFK-DEDYGSDLSELNETDEETEDSSDYEEEDRRI
        KLSGKHED D+ELMKEIR+Q+PG+VEDFK +E+Y SDL +    D+ ++ S D EEEDRRI
Subjt:  KLSGKHEDDDNELMKEIREQMPGQVEDFK-DEDYGSDLSELNETDEETEDSSDYEEEDRRI

A0A1S3CEX3 uncharacterized protein LOC1034999299.7e-5475.62Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR
        MKRA+WGAVFNVCSRTLSVSPPLRTFRS PLLS FSV TLRCYSSGNDKYN LNST  +NKDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR

Query:  KLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETEDSSDYEEEDRRI
        KLSGKHED D+ELMKEIR++MPG++EDFK E+Y S+L++        + +SD EEED+RI
Subjt:  KLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETEDSSDYEEEDRRI

A0A5D3BIA4 Uncharacterized protein9.7e-5475.62Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR
        MKRA+WGAVFNVCSRTLSVSPPLRTFRS PLLS FSV TLRCYSSGNDKYN LNST  +NKDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR

Query:  KLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETEDSSDYEEEDRRI
        KLSGKHED D+ELMKEIR++MPG++EDFK E+Y S+L++        + +SD EEED+RI
Subjt:  KLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETEDSSDYEEEDRRI

A0A6J1E804 uncharacterized protein LOC1114315727.4e-5474.85Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+SP L+T RSGPLL  FSV      RCYSSGNDKYNGLNSTT ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH D D+ELMKEIR+++PG+VEDFKDE+Y SDLS ELNE+DEE ++ S  EEEDRR+
Subjt:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDRRI

A0A6J1KP40 uncharacterized protein LOC1114952364.5e-5174.53Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+ P L+T RSGPLL  FSV      RCYSSGNDKYNGLNSTT ENKDSLV+D VS EELK KI++FYEGDV+SLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDR
        KRKLSGKH D D+ELMKEI ++MPG+VEDFKDE+Y SDLS +LNETDEE E+ S  EEEDR
Subjt:  KRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLS-ELNETDEETEDSSDYEEEDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73770.1 FUNCTIONS IN: molecular_function unknown9.7e-0631.78Show/hide
Query:  NSTTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEDDDNELMKEIREQMPG---QVEDFKDEDYGSDLSELNETDEETEDS
        +S ++ ++    E+ +S EELK +I  F  +G+ D++P +FEA++ RKLSGKH+D D+E+M  +R+       +V+D   +       + +++D E++D 
Subjt:  NSTTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEDDDNELMKEIREQMPG---QVEDFKDEDYGSDLSELNETDEETEDS

Query:  SDYEEED
         D +  D
Subjt:  SDYEEED

AT1G73770.2 FUNCTIONS IN: molecular_function unknown9.7e-0631.78Show/hide
Query:  NSTTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEDDDNELMKEIREQMPG---QVEDFKDEDYGSDLSELNETDEETEDS
        +S ++ ++    E+ +S EELK +I  F  +G+ D++P +FEA++ RKLSGKH+D D+E+M  +R+       +V+D   +       + +++D E++D 
Subjt:  NSTTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEDDDNELMKEIREQMPG---QVEDFKDEDYGSDLSELNETDEETEDS

Query:  SDYEEED
         D +  D
Subjt:  SDYEEED

AT3G18240.1 Ribosomal protein S24/S35, mitochondrial1.8e-1237.35Show/hide
Query:  NVCSRTLSVSPPLRTFRSGPLLSRFSVLT------LRCYSSGNDKYNGLNSTT--------NENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEA
        ++C+R + +SP + T +  P +   + +        R +SS     +G NSTT        +  K  LV +DVS +ELKS+I K++ EG+ D+LP + EA
Subjt:  NVCSRTLSVSPPLRTFRSGPLLSRFSVLT------LRCYSSGNDKYNGLNSTT--------NENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEA

Query:  ILKRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETED---SSDYEEEDRR
        +L+R+L  KH + D+EL+++I E +P + +D KDED+ SD  E + TDEE ED   S +Y  E  R
Subjt:  ILKRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETED---SSDYEEEDRR

AT3G18240.2 Ribosomal protein S24/S35, mitochondrial1.8e-1237.35Show/hide
Query:  NVCSRTLSVSPPLRTFRSGPLLSRFSVLT------LRCYSSGNDKYNGLNSTT--------NENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEA
        ++C+R + +SP + T +  P +   + +        R +SS     +G NSTT        +  K  LV +DVS +ELKS+I K++ EG+ D+LP + EA
Subjt:  NVCSRTLSVSPPLRTFRSGPLLSRFSVLT------LRCYSSGNDKYNGLNSTT--------NENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEA

Query:  ILKRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETED---SSDYEEEDRR
        +L+R+L  KH + D+EL+++I E +P + +D KDED+ SD  E + TDEE ED   S +Y  E  R
Subjt:  ILKRKLSGKHEDDDNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETED---SSDYEEEDRR

AT4G21460.1 Ribosomal protein S24/S35, mitochondrial8.2e-1339.22Show/hide
Query:  VCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNS--TTNENKDSLVEDDVSTEELKSKINK-FYEGDVDSLPTIFEAILKRKLSGKHEDD
        + S  +S + P  T  + P   +F   +     SG +      S  T + +K  LV +DVS +ELKS+I+K F EG+ D+LP + EA+L+R+L  KH + 
Subjt:  VCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNS--TTNENKDSLVEDDVSTEELKSKINK-FYEGDVDSLPTIFEAILKRKLSGKHEDD

Query:  DNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETED---SSDYEEEDRR
        D+ELM++I E +P + +D KDED+ SD  E + TDEE ED   S +Y  E  R
Subjt:  DNELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETED---SSDYEEEDRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGAGCTATATGGGGAGCTGTCTTCAATGTTTGTTCTCGAACACTTTCAGTCTCTCCTCCGCTACGAACCTTTCGCTCTGGTCCCTTACTGTCTCGATTTTCCGT
TTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGAACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGTACCGAAGAGC
TGAAGAGTAAAATTAATAAATTTTACGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACATGAAGATGATGATAAT
GAACTGATGAAAGAAATTCGAGAGCAAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGACTATGGTTCAGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGA
GGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAA
mRNA sequenceShow/hide mRNA sequence
GGCACGATTATTTTGTTCGTCGTGTTCGCGTATCATCTCTCCGGTCATAAACCCGAGAAAATGGGGCTAAACCCTAGAACTGTAAAGAAACGCCATGAAACGAGCTATAT
GGGGAGCTGTCTTCAATGTTTGTTCTCGAACACTTTCAGTCTCTCCTCCGCTACGAACCTTTCGCTCTGGTCCCTTACTGTCTCGATTTTCCGTTTTGACTTTGCGATGT
TACTCATCCGGGAATGACAAGTACAATGGATTGAACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGTACCGAAGAGCTGAAGAGTAAAATTAA
TAAATTTTACGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACATGAAGATGATGATAATGAACTGATGAAAGAAA
TTCGAGAGCAAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGACTATGGTTCAGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGAGGATTCCAGTGATTAT
GAGGAAGAAGATAGAAGAATATAAGTTATGTTGATAACGTGAGTTCGATAGAGTCCATACTTGTTTGATGTTAGATCTTACATTTTTGGGTGAAAATTTTCAACTTTTAA
CATCTTATTTAGTTTGAAAATCTTTTGATTCATTTTAACTCAGAGGAACACATCAGATGATCATGGTTTGATCTACGGGCACTCGAACCCCAGCTTGAGGAACTTTGTTG
AATGGAAAATTGTATGCTATACGTCTTTTAAATGCTAATATTTGGATTTATAACATTAGCATGGCCACAGCCAGAGATTTGGAGGTGCAAATTCCTACCTTATATTTGTT
GTATGTATTATGGTTTATTTGTAATCACTATTAAATATTTGTTCACTAATAGAATTATTATTCTTAAAACCCAAGGTGAATGGACTGGGCTTACACTTATGGATATAGAA
AATAAAAAAATAAAAAATAATAAATAATAAATAATGGACCGGGTGATTTTTCATCCTACACAATAGATGAGATTTAATTATAGATTAAAGTGTCATCGAATTCTAGAGGA
ATTTTTAG
Protein sequenceShow/hide protein sequence
MKRAIWGAVFNVCSRTLSVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEDDDN
ELMKEIREQMPGQVEDFKDEDYGSDLSELNETDEETEDSSDYEEEDRRI