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Clc04G11680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G11680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Genome locationClcChr04:25240179..25244556
RNA-Seq ExpressionClc04G11680
SyntenyClc04G11680
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030163 - protein catabolic process (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR003769 - Adaptor protein ClpS, core
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
IPR022935 - ATP-dependent Clp protease adaptor protein ClpS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012114.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-6580.24Show/hide
Query:  GERGHGSCNLRSTTSFSQPFLQPNQA-----------------RNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDN
        GE GHGSC+LRST SF+ PFLQ +QA                 RNRSIL MLSVAELG+GGGLLEKP  EKTTPGRESEF+VRKSRK APPYRVLLHNDN
Subjt:  GERGHGSCNLRSTTSFSQPFLQPNQA-----------------RNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDN

Query:  YNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD
        +NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Subjt:  YNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD

XP_008456997.1 PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo]1.3e-6095.24Show/hide
Query:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
        Q RNRS LMM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
Subjt:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC

Query:  AQVDAEDHCMQLRGNGLLSSIEPASD
        AQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  AQVDAEDHCMQLRGNGLLSSIEPASD

XP_022136971.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia]2.7e-6196.83Show/hide
Query:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
        Q RNRS LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIIC
Subjt:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC

Query:  AQVDAEDHCMQLRGNGLLSSIEPASD
        AQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  AQVDAEDHCMQLRGNGLLSSIEPASD

XP_022136972.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Momordica charantia]3.3e-7282.76Show/hide
Query:  LAQRLLHQITHSSSFYPSSSRPSEGERGHGSCNLRSTTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR
        L Q  LH   H+             ERG+GSCNLRS+TSF+QP LQ N+ RNRS LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR
Subjt:  LAQRLLHQITHSSSFYPSSSRPSEGERGHGSCNLRSTTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR

Query:  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD
        VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD

XP_038894047.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida]2.7e-6188.49Show/hide
Query:  STTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQ
        S+T     +    Q RNRS+LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRK RKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQ
Subjt:  STTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQ

Query:  EAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD
        EAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  EAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD

TrEMBL top hitse value%identityAlignment
A0A0A0LSY6 ClpS domain-containing protein2.4e-6094.44Show/hide
Query:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
        Q RNRS LMM+SVAELG+GGGLLEKP IEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
Subjt:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC

Query:  AQVDAEDHCMQLRGNGLLSSIEPASD
        AQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  AQVDAEDHCMQLRGNGLLSSIEPASD

A0A1S3C561 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like6.4e-6195.24Show/hide
Query:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
        Q RNRS LMM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
Subjt:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC

Query:  AQVDAEDHCMQLRGNGLLSSIEPASD
        AQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  AQVDAEDHCMQLRGNGLLSSIEPASD

A0A6J1C511 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X11.3e-6196.83Show/hide
Query:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
        Q RNRS LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIIC
Subjt:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC

Query:  AQVDAEDHCMQLRGNGLLSSIEPASD
        AQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  AQVDAEDHCMQLRGNGLLSSIEPASD

A0A6J1C6X4 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X21.6e-7282.76Show/hide
Query:  LAQRLLHQITHSSSFYPSSSRPSEGERGHGSCNLRSTTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR
        L Q  LH   H+             ERG+GSCNLRS+TSF+QP LQ N+ RNRS LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR
Subjt:  LAQRLLHQITHSSSFYPSSSRPSEGERGHGSCNLRSTTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR

Query:  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD
        VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD

A0A6J1K0P0 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like4.6e-5993.65Show/hide
Query:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC
        Q RNRSIL MLSVAELG+GGGLLEKPT EKTTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIIC
Subjt:  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC

Query:  AQVDAEDHCMQLRGNGLLSSIEPASD
        AQVDAEDHCMQLRGNGLLSSIEPASD
Subjt:  AQVDAEDHCMQLRGNGLLSSIEPASD

SwissProt top hitse value%identityAlignment
A0A2K3CNL6 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic2.5e-2253.85Show/hide
Query:  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLS
        GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S
Subjt:  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLS

Query:  SIEP
        +IEP
Subjt:  SIEP

Q31QE7 ATP-dependent Clp protease adapter protein ClpS4.9e-1858.23Show/hide
Query:  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP
        RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL SSIEP
Subjt:  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP

Q3AUR5 ATP-dependent Clp protease adapter protein ClpS2.8e-1342.16Show/hide
Query:  EKPTIEKTTPGRESEFD--VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSI
        E PT    +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSI
Subjt:  EKPTIEKTTPGRESEFD--VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSI

Query:  EP
        EP
Subjt:  EP

Q5N3U1 ATP-dependent Clp protease adapter protein ClpS1.3e-1556.16Show/hide
Query:  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGL
        RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL
Subjt:  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGL

Q9SX29 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic1.4e-5283.47Show/hide
Query:  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQ
        NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ
Subjt:  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQ

Query:  VDAEDHCMQLRGNGLLSSIEP
         DAE HCMQLRGNGLLSS+EP
Subjt:  VDAEDHCMQLRGNGLLSSIEP

Arabidopsis top hitse value%identityAlignment
AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein9.7e-5483.47Show/hide
Query:  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQ
        NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ
Subjt:  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQ

Query:  VDAEDHCMQLRGNGLLSSIEP
         DAE HCMQLRGNGLLSS+EP
Subjt:  VDAEDHCMQLRGNGLLSSIEP

AT1G68660.2 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein5.6e-3361.98Show/hide
Query:  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQ
        NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMK                              
Subjt:  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQ

Query:  VDAEDHCMQLRGNGLLSSIEP
         DAE HCMQLRGNGLLSS+EP
Subjt:  VDAEDHCMQLRGNGLLSSIEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAACGAGTTTAGCTCAACGACTGCTGCACCAAATCACTCACTCTTCATCCTTCTACCCTTCTTCAAGCAGGCCGAGCGAGGGCGAGAGAGGCCATGGAAGCTG
CAATTTGCGGTCGACTACCTCTTTCTCCCAACCATTTCTTCAACCCAACCAAGCCAGAAACCGGAGCATCTTAATGATGTTATCAGTTGCTGAGCTGGGAAGAGGTGGGG
GGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTGCTCCGCCTTATCGAGTGTTGCTACATAAC
GACAATTACAACAAGCGCGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGAT
GGCAGTGGTAATTATCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGTGATGAGTTTCCATTTC
CAGTCCTTCCAGTTAAGGGAAGTAGCTCAGAACGGCTGGAGTTTCCAGTTCGCAGTTCCAGTCCTTCTAGAGGGCAAAGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAACGAGTTTAGCTCAACGACTGCTGCACCAAATCACTCACTCTTCATCCTTCTACCCTTCTTCAAGCAGGCCGAGCGAGGGCGAGAGAGGCCATGGAAGCTG
CAATTTGCGGTCGACTACCTCTTTCTCCCAACCATTTCTTCAACCCAACCAAGCCAGAAACCGGAGCATCTTAATGATGTTATCAGTTGCTGAGCTGGGAAGAGGTGGGG
GGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTGCTCCGCCTTATCGAGTGTTGCTACATAAC
GACAATTACAACAAGCGCGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGAT
GGCAGTGGTAATTATCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGTGATGAGTTTCCATTTC
CAGTCCTTCCAGTTAAGGGAAGTAGCTCAGAACGGCTGGAGTTTCCAGTTCGCAGTTCCAGTCCTTCTAGAGGGCAAAGAGAGTAA
Protein sequenceShow/hide protein sequence
MAKTSLAQRLLHQITHSSSFYPSSSRPSEGERGHGSCNLRSTTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHN
DNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDEFPFPVLPVKGSSSERLEFPVRSSSPSRGQRE