; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G11893 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G11893
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGTPase IMAP family member 1, putative
Genome locationClcChr04:25465932..25468373
RNA-Seq ExpressionClc04G11893
SyntenyClc04G11893
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652531.1 hypothetical protein Csa_013077, partial [Cucumis sativus]9.2e-1248.31Show/hide
Query:  AAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPY
        AAEMV +W+ +++ FCV+SAI IATVS+ I+T L   F  LS+ ++ CFV    A++IN   + +S+ILYC GG  + ++ FIA AIPY
Subjt:  AAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPY

KAF3947053.1 hypothetical protein CMV_026760 [Castanea mollissima]1.8e-0738.6Show/hide
Query:  LFRSQPNDLVTETRHEPPGSRPRTAAEMV-MQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGF
        L R  P+ +    + E P        E+   +W +L VTFC+ASAI IA VS+Q+ ++LS  FH LS+ ++  F    ++K I  K    +Q+L  FG F
Subjt:  LFRSQPNDLVTETRHEPPGSRPRTAAEMV-MQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGF

Query:  WFVTAFFIAIAIPY
        + +TAFF+AI IP+
Subjt:  WFVTAFFIAIAIPY

KAF3947054.1 hypothetical protein CMV_026761 [Castanea mollissima]3.1e-0738.68Show/hide
Query:  EPPGSRPRTAA--------EMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFI
        +P G+ P  AA        ++ M W ++M+ FC+ASAI IA VS+Q++ +LS  FH LS+ ++  F    +++ I  K    +Q+L   G F+ VTAFF+
Subjt:  EPPGSRPRTAA--------EMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFI

Query:  AIAIPY
        AI IP+
Subjt:  AIAIPY

KAG6572911.1 hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia]8.0e-1655Show/hide
Query:  PGSRPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF
        P      AAEMV +W+ ++V FCV+SAIAIATVS+QIE +L  +F+FLS+ L+ CF F A  K+     +RVS+ILYC GG   VTA FIA AIPYA  F
Subjt:  PGSRPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF

KAG6584385.1 hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia]2.1e-2471.13Show/hide
Query:  RPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF
        RP +A EM+MQWE +MVTFC+ +AIAIATVS+QI+T+LS MF FLS  LMGCF FT  AK+I  K QRVS ILY  GGF FVTAFFIAIAIPYAF F
Subjt:  RPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF

TrEMBL top hitse value%identityAlignment
A0A0A0LCY2 Uncharacterized protein4.9e-1146.74Show/hide
Query:  AEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF
        AEMV + +++++ FC++SAI IATVS+Q +T+L   F FLS+ ++ CF+    A++I+   + +S+ILYCFGGF   T  FIA AIPY   F
Subjt:  AEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF

A0A0A0LQB6 Uncharacterized protein4.7e-1452.04Show/hide
Query:  GSRPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIET--RLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYA
        G +    AEMV +W++++V  CV+SAI IATVS+QIET  +L   F FLS++++ CF F   AK+     + VS+ILYC GGF  VTAFFIA AIP+A
Subjt:  GSRPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIET--RLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYA

A0A0A0LSX4 Uncharacterized protein6.8e-1347.87Show/hide
Query:  AAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEFL
        AAEMV +W+ +++ FCV+SAI IATVS+ I+T L   F  LS+ ++ CFV    A++IN   + +S+ILYC GG  + ++ FIA AIPYA  F+
Subjt:  AAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEFL

A0A7N2M5A3 Uncharacterized protein1.3e-0841.51Show/hide
Query:  EPPGSRPRTAAEMV--------MQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFI
        +P G+ P  AA +V        M W ++M+ FC+ASAI IA VS+Q+  +LS  FH LS+  +  F    +++ I  K    +Q+L   G F+ VTAFFI
Subjt:  EPPGSRPRTAAEMV--------MQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFI

Query:  AIAIPY
        AIAIP+
Subjt:  AIAIPY

A0A7N2R866 Uncharacterized protein4.2e-1044.19Show/hide
Query:  MQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAF
        M+W ++++ FC+ASA+ IA +S+Q+ T+L  +FH  S+ ++  F    ++K IN K  R +Q+L  FG F+ VTAFFIAI IP+ F
Subjt:  MQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTAATTACAAACTTCTTTAACACTTTAATATTATTCCGATCCCAACCGAATGACCTAGTAACAGAAACCCGTCACGAGCCGCCAGGCTCGAGGCCGCGAACCGC
GGCGGAGATGGTAATGCAATGGGAAAAATTGATGGTTACATTTTGTGTAGCCTCAGCCATTGCCATAGCCACCGTATCACTTCAAATTGAAACCAGGCTTTCATTAATGT
TTCATTTTCTGTCAGTTATGTTAATGGGTTGTTTTGTTTTTACAGCCTTAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGG
TTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATTTGAATTTCTTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCTAATTACAAACTTCTTTAACACTTTAATATTATTCCGATCCCAACCGAATGACCTAGTAACAGAAACCCGTCACGAGCCGCCAGGCTCGAGGCCGCGAACCGC
GGCGGAGATGGTAATGCAATGGGAAAAATTGATGGTTACATTTTGTGTAGCCTCAGCCATTGCCATAGCCACCGTATCACTTCAAATTGAAACCAGGCTTTCATTAATGT
TTCATTTTCTGTCAGTTATGTTAATGGGTTGTTTTGTTTTTACAGCCTTAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGG
TTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATTTGAATTTCTTATGTGA
Protein sequenceShow/hide protein sequence
MNLITNFFNTLILFRSQPNDLVTETRHEPPGSRPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGG
FWFVTAFFIAIAIPYAFEFLM