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Clc04G11897 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G11897
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGTPase IMAP family member 1, putative
Genome locationClcChr04:25480665..25481174
RNA-Seq ExpressionClc04G11897
SyntenyClc04G11897
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652531.1 hypothetical protein Csa_013077, partial [Cucumis sativus]7.7e-1148.31Show/hide
Query:  AAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPY
        AAEMV +W+ +++  CV+SAI IATVS+ I+T+L   F  LSI ++ CFV    A++IN   + +S+ILYC GG    ++ FIA AIPY
Subjt:  AAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPY

KAF3437981.1 hypothetical protein FNV43_RR20737 [Rhamnella rubrinervis]1.8e-0737.19Show/hide
Query:  DLEPEIHHEPSGSPPPTAAEM----VMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVT
        D E EI    SG  P  A       +  W K++V  C  SAI IA +S Q+ + L  +FHFLS++++  FV   ++K+IN K    +++L     +++VT
Subjt:  DLEPEIHHEPSGSPPPTAAEM----VMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVT

Query:  AFFIAIAIP------YASKFQ
        AFFIAI+IP      Y  KF+
Subjt:  AFFIAIAIP------YASKFQ

KAF3437984.1 hypothetical protein FNV43_RR20740 [Rhamnella rubrinervis]6.1e-0831.58Show/hide
Query:  LEPEIHHEPSGSPPPTAAEM---VMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAF
        LEPE+  + +G       EM   + +W K++V  C+ SAI +A +S Q+ + L  +FH LS++++  F    + K++N K    +++L     F++VTAF
Subjt:  LEPEIHHEPSGSPPPTAAEM---VMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAF

Query:  FIAIAIPYASKFQIVTLVIYLLFMVIIPICYFS
        FIAI+IP+    ++  LV+Y++ ++++P+ +++
Subjt:  FIAIAIPYASKFQIVTLVIYLLFMVIIPICYFS

KAG6572911.1 hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia]2.0e-1951.15Show/hide
Query:  QLNDLEPEIHHEPSGSPPP----TAAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFW
        +L +LE  +     G  P      AAEMV +W+ ++V  CV+SAIAIATVS+QIE KL  +F+FLS+TL+ CF F A  K+     +RVS+ILYC GG  
Subjt:  QLNDLEPEIHHEPSGSPPP----TAAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFW

Query:  LVTAFFIAIAIPYASKFQIVTLVIYLLFMVI
         VTA FIA AIPYAS FQI+  +IYL+F ++
Subjt:  LVTAFFIAIAIPYASKFQIVTLVIYLLFMVI

KAG6584385.1 hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia]4.9e-2652.69Show/hide
Query:  MMIIRRVMSGINNFFLATLIRLITNIFNTSILFQSQLNDLEPEIHHEPSGSP-----PPTAAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHF
        MM    V  GI   F   L R    I N +     +L      +H E +G+      P +A EM+MQWE +MVT C+ +AIAIATVS+QI+TKLS MF F
Subjt:  MMIIRRVMSGINNFFLATLIRLITNIFNTSILFQSQLNDLEPEIHHEPSGSP-----PPTAAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHF

Query:  LSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMVI
        LS  LMGCF FT  AK+I  K QRVS ILY  GGF  VTAFFIAIAIPYA  FQI+TL +YL+F+ I
Subjt:  LSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMVI

TrEMBL top hitse value%identityAlignment
A0A0A0LCY2 Uncharacterized protein8.0e-1446.23Show/hide
Query:  AEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIY
        AEMV + +++++  C++SAI IATVS+Q +TKL   F FLSI ++ CF+    A++I+   + +S+ILYCFGGF   T  FIA AIPY + F I+ +V+Y
Subjt:  AEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIY

Query:  LLFMVI
         +F +I
Subjt:  LLFMVI

A0A0A0LQB6 Uncharacterized protein3.5e-1754.63Show/hide
Query:  AEMVMQWEKLMVTICVTSAIAIATVSLQIET--KLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLV
        AEMV +W++++V +CV+SAI IATVS+QIET  +L   F FLSI ++ CF F   AK+     + VS+ILYC GGF  VTAFFIA AIP+A  FQI+  +
Subjt:  AEMVMQWEKLMVTICVTSAIAIATVSLQIET--KLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLV

Query:  IYLLFMVI
        +YLLF  I
Subjt:  IYLLFMVI

A0A0A0LSX4 Uncharacterized protein6.8e-1349.46Show/hide
Query:  AAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKF
        AAEMV +W+ +++  CV+SAI IATVS+ I+T+L   F  LSI ++ CFV    A++IN   + +S+ILYC GG    ++ FIA AIPYAS F
Subjt:  AAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKF

A0A7N2M5A3 Uncharacterized protein2.3e-0837.5Show/hide
Query:  EPSGSPPPTAAEMV--------MQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFI
        +P G+ P  AA +V        M W ++M+  C+ SAI IA VS+Q+  +LS  FH LS+  +  F    +++ I  K    +Q+L   G F+ VTAFFI
Subjt:  EPSGSPPPTAAEMV--------MQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFI

Query:  AIAIPYASKFQIVTLVIYLLFMVIIPIC
        AIAIP+    +  T  IY + +  I IC
Subjt:  AIAIPYASKFQIVTLVIYLLFMVIIPIC

A0A7N2R866 Uncharacterized protein2.0e-0937.74Show/hide
Query:  MQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFM
        M+W ++++  C+ SA+ IA +S+Q+ T+L  +FH  S+ ++  F    ++K IN K  R +Q+L  FG F+ VTAFFIAI IP+    +  + V+Y +  
Subjt:  MQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFM

Query:  VIIPIC
        + I IC
Subjt:  VIIPIC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATTATTAGAAGAGTTATGAGTGGTATCAATAACTTCTTTCTAGCAACTCTCATTAGACTAATTACAAATATCTTCAACACTTCAATATTATTCCAATCCCAACT
CAATGACCTAGAACCAGAAATTCATCATGAGCCGTCGGGATCGCCGCCACCAACGGCGGCAGAGATGGTAATGCAGTGGGAAAAATTGATGGTTACAATTTGTGTAACCT
CAGCCATAGCCATAGCCACCGTTTCCCTCCAAATTGAAACCAAGTTATCTTTAATGTTTCATTTTCTGTCGATTACGTTAATGGGTTGCTTTGTTTTTACAGCCTTAGCC
AAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTACTGTTTTGGTGGGTTCTGGTTGGTGACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATCTAA
GTTTCAAATTGTAACATTGGTCATCTACCTCCTCTTCATGGTCATCATTCCAATATGCTATTTCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGATTATTAGAAGAGTTATGAGTGGTATCAATAACTTCTTTCTAGCAACTCTCATTAGACTAATTACAAATATCTTCAACACTTCAATATTATTCCAATCCCAACT
CAATGACCTAGAACCAGAAATTCATCATGAGCCGTCGGGATCGCCGCCACCAACGGCGGCAGAGATGGTAATGCAGTGGGAAAAATTGATGGTTACAATTTGTGTAACCT
CAGCCATAGCCATAGCCACCGTTTCCCTCCAAATTGAAACCAAGTTATCTTTAATGTTTCATTTTCTGTCGATTACGTTAATGGGTTGCTTTGTTTTTACAGCCTTAGCC
AAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTACTGTTTTGGTGGGTTCTGGTTGGTGACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATCTAA
GTTTCAAATTGTAACATTGGTCATCTACCTCCTCTTCATGGTCATCATTCCAATATGCTATTTCTCTTAG
Protein sequenceShow/hide protein sequence
MMIIRRVMSGINNFFLATLIRLITNIFNTSILFQSQLNDLEPEIHHEPSGSPPPTAAEMVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALA
KVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMVIIPICYFS