CuGenDBv2

Gene ID	Clc04G12250
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein TIC 214
Genome location	ClcChr04:25760604..25767764
RNA-Seq Expression	Clc04G12250
Synteny	Clc04G12250
Gene Ontology terms	GO:0015031 - protein transport (biological process) GO:0009706 - chloroplast inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR008896 - Protein TIC214

Homology

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GenBank top hits

e value

%identity

Alignment

APW82691.1 Ycf1 [Citrullus lanatus subsp. vulgaris]

1.4e-21

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

KAF9599033.1 hypothetical protein IFM89_033378 [Coptis chinensis]

1.3e-22

79.78

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Query:  KALLSLPSPSSGYGRRNREESISNNRIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        +ALLSLPS SSGYGRRNRE      RIPSPIVTKKLKETS+ +ERG+SEEETDVEIETTSE KGTKQEQ+G TEED S SL SEEKEDP
Subjt:  KALLSLPSPSSGYGRRNREESISNNRIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

QZL38742.1 Ycf1 protein [Citrullus ecirrhosus]

1.4e-21

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

YP_009326048.1 Ycf1 [Citrullus lanatus]

1.4e-21

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

YP_009431615.1 Ycf1 [Citrullus amarus]

1.4e-21

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE53 Ycf1

6.7e-22

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

A0A1P8LFC3 Ycf1

6.7e-22

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

A0A249RX64 Protein TIC 214

6.7e-22

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

A0A249RXF8 Protein TIC 214

6.7e-22

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

A0A343A8H0 Protein TIC 214

6.7e-22

98.44

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+GFTEEDTSPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

SwissProt top hits

e value

%identity

Alignment

A6MM95 Protein TIC 214

3.9e-19

85.94

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        R+P+PIVTKKLKETS+TEERGESEEE DVEIETTSETKGTKQEQ+  TEED SPSL SEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

Q06GT8 Protein TIC 214

1.0e-19

90.62

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQ+G TEED  PS  SEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

Q0G9G1 Protein TIC 214

8.7e-19

89.06

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKKLKETSETEERGES EETDVEIETTSETKGTKQEQ+  TEED  PSL SEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

Q0ZIW0 Protein TIC 214

1.2e-20

89.06

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPI+TKK+KETSETEERGESEEETDVEIE TSETKGTKQEQ+  TEED SPSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

Q49KU0 Protein TIC 214

3.9e-19

87.5

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP
        RIPSPIVTKK KETSETEERGE EEETDVEIETT ETKGT+QEQ+G TEED  PSLFSEEKEDP
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDP

Arabidopsis top hits

e value

%identity

Alignment

ATCG01000.1 Ycf1 protein

2.8e-04

50.79

Show/hide

Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKED
        RIPSPI TKKLK                     TSET GTKQ+Q+  TEE   PSLFSEE ED
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKED

ATCG01130.1 Ycf1 protein

2.8e-04

50.79

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Query:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKED
        RIPSPI TKKLK                     TSET GTKQ+Q+  TEE   PSLFSEE ED
Subjt:  RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKED

Sequences

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CDS sequence

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ATGAAGGAAAGCTATAGTAGCTTACTGGAGTGGCCACCCATGGCGGCCAGAAGGAGCAATGATAGAGCCAGAGCAGCCATGGCAGAGAGAAAATGGAAAGTTGAAGAAGA
AGGTATGAAGGCAAGTGGAGGGGAAGATTACCCCAAGAATTTTGGGTCAAATAGGGAAAGTTTTCTATCCTTGGTCAGATCGGCTAATTCCAGTGTTCCCATGTGTGCGC
CTGCCAGGCTATTGATACATATGCTGTCGGAGCAATCAACGGGTTTCATTCGTGTGTATGCTAAGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGG
AACCGAGAAGAAAGTATCAGCAACAACAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAACGGAGGAAAGGGGGGAAAGCGAGGAAGAAACAGA
TGTCGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAAAGGGATTCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCCC
TCGGATGGTTCCACAATCGGTTCTACGTACAACAATGTGTTGAACTACTTCAACAAGTCTGCGTTCGTGTATTCTGGAATGGACACATTTCAATTCTATCTCATCGGGTA
CTCAACAGCTTCCTAAAGTACACTGACTTGTCCCTCAGTCGAAACACTAACGCACTCCTCGAGATATGA

mRNA sequence

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Protein sequence

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MKESYSSLLEWPPMAARRSNDRARAAMAERKWKVEEEGMKASGGEDYPKNFGSNRESFLSLVRSANSSVPMCAPARLLIHMLSEQSTGFIRVYAKALLSLPSPSSGYGRR
NREESISNNRIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQKGFTEEDTSPSLFSEEKEDPLGWFHNRFYVQQCVELLQQVCVRVFWNGHISILSHRV
LNSFLKYTDLSLSRNTNALLEI

Clc04G12250 (gene) of Watermelon (cordophanus) v2 genome