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Clc04G12370 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G12370
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein SAR DEFICIENT 1
Genome locationClcChr04:25872562..25873458
RNA-Seq ExpressionClc04G12370
SyntenyClc04G12370
Gene Ontology termsGO:0005516 - calmodulin binding (molecular function)
InterPro domainsIPR012416 - CALMODULIN-BINDING PROTEIN60


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ99002.1 protein SAR DEFICIENT 1 [Cucumis melo var. makuwa]1.3e-0664.41Show/hide
Query:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
        RHC   +      DLEFTD SS IRSRK    + IVSGSDR K PRI+EAITEPFVVKD
Subjt:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
XP_004137482.1 protein SAR DEFICIENT 1 [Cucumis sativus]1.3e-0664.41Show/hide
Query:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
        RHC   +      DLEFTD SS IRSRK    + IVSGSDR K PRI+EAITEPFVVKD
Subjt:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
XP_008459337.1 PREDICTED: protein SAR DEFICIENT 1 [Cucumis melo]1.3e-0664.41Show/hide
Query:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
        RHC   +      DLEFTD SS IRSRK    + IVSGSDR K PRI+EAITEPFVVKD
Subjt:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
XP_038896024.1 protein SAR DEFICIENT 1-like [Benincasa hispida]1.7e-0662.71Show/hide
Query:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
        RHC   +      DLEFTD SS IRSRK    + +VSGSDR K PRI+EAITEPFVVKD
Subjt:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
TrEMBL top hitse value%identityAlignment
A0A1S3C9X0 protein SAR DEFICIENT 16.2e-0764.41Show/hide
Query:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
        RHC   +      DLEFTD SS IRSRK    + IVSGSDR K PRI+EAITEPFVVKD
Subjt:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
A0A5D3BGW2 Protein SAR DEFICIENT 16.2e-0764.41Show/hide
Query:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
        RHC   +      DLEFTD SS IRSRK    + IVSGSDR K PRI+EAITEPFVVKD
Subjt:  RHCKREVKRCDPWDLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKD
A0A6J1GT77 protein SAR DEFICIENT 1-like4.9e-0463.83Show/hide
Query:  DLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKDQ
        D+EFTD S  IRSRK    + IV GSDR   PRI+EAI+EPFVV DQ
Subjt:  DLEFTDYSSCIRSRK----SPIVSGSDRKKVPRIQEAITEPFVVKDQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATTGTCCTTGGATTTTTAGGAAACTCTTTAGAAACTTTCGAACTTGTGATAAAAGGTGACTATGGACATCCGCCCGATCCTCTCGATCACCTGCAGCAATTCGC
CGACGAACAATTCCAATTTTCATTCACGATGAATTCGGCAACGAAGGATCGTCATTGTAAAAGAGAGGTCAAACGCTGCGACCCTTGGGATCTTGAATTCACCGATTATT
CAAGCTGCATTCGGAGCAGGAAATCCCCAATTGTTTCCGGGTCGGATCGTAAAAAAGTCCCCCGGATTCAGGAAGCCATAACCGAACCGTTTGTGGTCAAAGATCAAACA
GTGACAAATCTTCTCCAAAACTATTATATTTCATCATATCTCCTTCCCAATTTTCCGGAAACTAAATTTCAATTTTCAGAACATCCATTAAAACTTGATAACCAATGCAC
TTTTTTGACTGCTGATGAATTGCTTTCGAGGATTCAAATTCGCTTCCTTGATACGTTATCTGCGAGCCATTTTTTCATCGATATTCTCTGGTACTCACCCTTCGAGGATA
AAGCTCGCTTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAATTGTCCTTGGATTTTTAGGAAACTCTTTAGAAACTTTCGAACTTGTGATAAAAGGTGACTATGGACATCCGCCCGATCCTCTCGATCACCTGCAGCAATTCGC
CGACGAACAATTCCAATTTTCATTCACGATGAATTCGGCAACGAAGGATCGTCATTGTAAAAGAGAGGTCAAACGCTGCGACCCTTGGGATCTTGAATTCACCGATTATT
CAAGCTGCATTCGGAGCAGGAAATCCCCAATTGTTTCCGGGTCGGATCGTAAAAAAGTCCCCCGGATTCAGGAAGCCATAACCGAACCGTTTGTGGTCAAAGATCAAACA
GTGACAAATCTTCTCCAAAACTATTATATTTCATCATATCTCCTTCCCAATTTTCCGGAAACTAAATTTCAATTTTCAGAACATCCATTAAAACTTGATAACCAATGCAC
TTTTTTGACTGCTGATGAATTGCTTTCGAGGATTCAAATTCGCTTCCTTGATACGTTATCTGCGAGCCATTTTTTCATCGATATTCTCTGGTACTCACCCTTCGAGGATA
AAGCTCGCTTTCTTTAA
Protein sequenceShow/hide protein sequence
MVIVLGFLGNSLETFELVIKGDYGHPPDPLDHLQQFADEQFQFSFTMNSATKDRHCKREVKRCDPWDLEFTDYSSCIRSRKSPIVSGSDRKKVPRIQEAITEPFVVKDQT
VTNLLQNYYISSYLLPNFPETKFQFSEHPLKLDNQCTFLTADELLSRIQIRFLDTLSASHFFIDILWYSPFEDKARFL